Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01600 266 / 5e-86 NAC ANAC044 NAC domain containing protein 44 (.1) AT5G14490 250 / 4e-80 NAC ANAC085 NAC domain containing protein 85 (.1) AT1G25580 251 / 4e-79 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G29230 230 / 9e-71 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT5G56620 210 / 3e-64 NAC ANAC099 NAC domain containing protein 99 (.1) AT1G28470 205 / 4e-63 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT4G28500 203 / 1e-62 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT1G02230 60 / 1e-09 NAC ANAC004 NAC domain containing protein 4 (.1) AT1G02220 59 / 2e-09 NAC ANAC003 NAC domain containing protein 3 (.1) AT3G18400 59 / 2e-09 NAC ANAC058 NAC domain containing protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116600 [exp] 281 / 4e-91 AT1G25580 509 / 4e-180 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G129700 [exp] 261 / 1e-83 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G068700 [exp] 223 / 2e-68 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.006G152700 [exp] 223 / 2e-68 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.017G016700 [exp] 213 / 3e-66 AT4G28500 344 / 4e-119 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.004G049300 [exp] 209 / 2e-64 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.011G058400 [exp] 203 / 1e-61 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.007G135300 [exp] 198 / 1e-60 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.012G056300 [exp] 57 / 7e-09 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003668 [exp] 377 / 3e-128 AT5G14490 273 / 2e-88 NAC domain containing protein 85 (.1) Lus10041492 [exp] 248 / 1e-78 AT1G25580 486 / 7e-171 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10021708 [exp] 245 / 1e-76 AT1G25580 462 / 4e-161 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10034999 [exp] 223 / 8e-68 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10012927 [exp] 219 / 3e-67 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10039873 [exp] 208 / 3e-64 AT4G28500 355 / 5e-123 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10018637 [exp] 205 / 3e-63 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10013967 [exp] 203 / 3e-62 AT4G28500 320 / 2e-109 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10015392 [exp] 198 / 8e-61 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10028824 [exp] 54 / 2e-07 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G343800.2 pacid=42788403 polypeptide=Potri.001G343800.2.p locus=Potri.001G343800 ID=Potri.001G343800.2.v4.1 annot-version=v4.1 ATGGCAAGGGCTTGGCTTATTGATGGCAGATCAATTGCAAGGAAAGTGTCACGATCTTCTGCTTATCAAATCAAAGACTGTGGGGCAAATCGTGAGTGCC CAAAGTGCCATTGTCATATAGATAACAGTGATGTTACTCAAGAATGGCCTGGCCTGCCTATTGGTGTAAAGTTTGATCCTTCTGATGCACAGCTTTTAGA GCATTTAGAAGCAAAATGTGCTGTTGGAAATTCCAAACCTCACATGTTCATTGATGAGTTTATTCCAACACTAGATGGTGATAAAGGAATTTGTTATACC CATCCAGCAAAGCTACCTGGTGCCAAGAAAGATGGAAATAGTATCCATTTCTTTCACAGAACAAATAATGCTTATGCTACTGGTCAACGAAAGCGCCGGA AGATCCACTGTGAAGTCGGTTCCAATGAGGAGGGTGTCCGTTGGCACAAGACAGGCAAGACAAAACCTGTGATGGACAATGGAGTTCAGAAAGGCTGCAA GAAAATCATGGTTCTTTATAAAAGTTCAAAGAAGGGGTCAAAACCAGATAAGTCTAAGTGGGTTATGCATCAGTACCATCTGGGTACTGATGAAGATGAA AAGGAAGGTGAATATGTAGTTTCCAAAATTTTCTACCAGCAGAAACAAACTGAAAAGAACGATGACAATCTACTTATTGAAGATAATGATATTTTGTCAC ATCAAACTAGTCCAAGGACCCCTAATTCCAATCCTCCCAACCCGCCACGACCAGGGAAATCTGTCATGTATGATGACATTGCCAATGATAACATAACGCA TTTGGCTGGGCAGAACAATGAGATTAAGGAAGAAGCACCTGATGTCCCAGCACATGTTTTTCAGCTTGAGGGTGATGTGGAATTCCCTGAATGGTTTGCT GGTGAATCTCAGGCTGTTGAAAACTCTGATTTCACTGCCTTAGATGATTCTCTGTTATGCAATGAAATTTTTGTTTCTGCTCCTCGTGTTCCAAATAATT CGGGGGTAAACCGTGTTTCATACACTGGCATGGCACACAATACAAACGAAGTGAATGGAAACAATAACGAACCTTGTGGAATTGCTGAATTGGAGAACCT TGAGCTGGACACTCCACCAGATTTCCAGCTTGCTGATCTGCAGTTTGGCTCTCAGGAAAGTATCCTTGGATGGCTAGACCGATTGTGA
AA sequence Show only first row Show all	>Potri.001G343800.2 pacid=42788403 polypeptide=Potri.001G343800.2.p locus=Potri.001G343800 ID=Potri.001G343800.2.v4.1 annot-version=v4.1 MARAWLIDGRSIARKVSRSSAYQIKDCGANRECPKCHCHIDNSDVTQEWPGLPIGVKFDPSDAQLLEHLEAKCAVGNSKPHMFIDEFIPTLDGDKGICYT HPAKLPGAKKDGNSIHFFHRTNNAYATGQRKRRKIHCEVGSNEEGVRWHKTGKTKPVMDNGVQKGCKKIMVLYKSSKKGSKPDKSKWVMHQYHLGTDEDE KEGEYVVSKIFYQQKQTEKNDDNLLIEDNDILSHQTSPRTPNSNPPNPPRPGKSVMYDDIANDNITHLAGQNNEIKEEAPDVPAHVFQLEGDVEFPEWFA GESQAVENSDFTALDDSLLCNEIFVSAPRVPNNSGVNRVSYTGMAHNTNEVNGNNNEPCGIAELENLELDTPPDFQLADLQFGSQESILGWLDRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01600	NAC	ANAC044	NAC domain containing protein ...		Potri.001G343800 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G002800 [exp]	2.00	0.7250
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.014G109700 [exp]	3.31	0.7642
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	3.87	0.7215	Pt-APP.2
AT3G01516			unknown protein		Potri.001G349700 [exp]	5.74	0.6954
					Potri.001G027950 [exp]	15.62	0.7206
AT1G14200			RING/U-box superfamily protein...		Potri.019G086601 [exp]	17.74	0.7091
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G020200 [exp]	21.35	0.7082
AT3G44850			Protein kinase superfamily pro...		Potri.004G190400 [exp]	21.44	0.6247
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.009G093100 [exp]	21.90	0.6519
AT1G16900			Alg9-like mannosyltransferase ...		Potri.001G392050 [exp]	28.77	0.6982

Compare expression of checked genes

Potri.001G343800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.