Plant FIBer expression Database

Potri.001G344000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40530 377 / 5e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002522
[exp]
394 / 5e-140 AT5G40530 374 / 2e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Lus10022276
[exp]
377 / 1e-132 AT5G40530 354 / 4e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
Representative CDS sequence
>Potri.001G344000.1 pacid=42789164 polypeptide=Potri.001G344000.1.p locus=Potri.001G344000 ID=Potri.001G344000.1.v4.1 annot-version=v4.1
ATGAAGGAAACAAGGAGCACAAAACGCAAGAGAGAAAAACATGGAAAACCTCAAAATATGGCTTCTGCCTCCTCGAAAATATCAAAGTCATCCTCTAATT
TTCTCGACAAGATGCGAGCAAGATTATCAGGTGGCCACTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGAGATGAAGCTCTCGACTATTTTAA
AGAAGACCCATCGTTGTTTGATATGTATCATACCGGATATCAAGAACAGATGTCACATTGGCCCGAGCAGCCAGTGAACATAATCATACAGTGGCTAAAA
GCTCGCAGCTCTTCTTTAGTTGTTGCTGATTTTGGCTGCGGGGATGCACGCCTTGCAAAAAATGTGAAGAATAAAGTTTTCTCTTTCGATCTTGTGTCCA
ATGATCCTTCAGTAATTGCTTGTGATATGTCAAATACACCCCTTGATGCTTCATCCATAGACGTTGCTGTCTTTTGCCTCTCATTGATGGGGACTAACTT
TCCAAGTTACCTTGAGGAAGCGCACAGAGTTCTGAAGCCCAGTGGGTGGCTTTTGATAGCAGAAGTAAAAAGCAGATTGGATCCAAACACTGGAGGAGCA
GACCCAAAAATGTTTTCAAAGTCCATATCTGATCTAGGATTTACCTCAACGTTAAAGGATTTCTCAAACAAAATGTTTGTTTTGCTATATTTCCAGAAGA
AGGAAAAAGAAACTTCGACAAGAAAAGGAATTGAATGGCCTGAGTTGAAACCTTGTTTGTACAAGCGTCGGTGA
AA sequence
>Potri.001G344000.1 pacid=42789164 polypeptide=Potri.001G344000.1.p locus=Potri.001G344000 ID=Potri.001G344000.1.v4.1 annot-version=v4.1
MKETRSTKRKREKHGKPQNMASASSKISKSSSNFLDKMRARLSGGHFRMINEKLYTCTGDEALDYFKEDPSLFDMYHTGYQEQMSHWPEQPVNIIIQWLK
ARSSSLVVADFGCGDARLAKNVKNKVFSFDLVSNDPSVIACDMSNTPLDASSIDVAVFCLSLMGTNFPSYLEEAHRVLKPSGWLLIAEVKSRLDPNTGGA
DPKMFSKSISDLGFTSTLKDFSNKMFVLLYFQKKEKETSTRKGIEWPELKPCLYKRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G40530 S-adenosyl-L-methionine-depend... Potri.001G344000
[exp]
0 1
AT1G60080 3'-5'-exoribonuclease family p... Potri.006G051200
[exp]
3.00 0.8118
AT4G32175 PNAS-3 related (.1) Potri.012G080300
[exp]
4.89 0.7290
AT4G33100 unknown protein Potri.006G224400
[exp]
15.87 0.7267
AT5G54580 RNA-binding (RRM/RBD/RNP motif... Potri.001G409800
[exp]
19.64 0.7973
AT5G14590 Isocitrate/isopropylmalate deh... Potri.001G347800
[exp]
20.73 0.7784
AT1G22970 unknown protein Potri.008G126400
[exp]
23.15 0.6952
AT4G30930 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ri... Potri.015G095700
[exp]
23.91 0.7798 Pt-RPL21.5
AT4G13850 ATGRP2, GR-RBP2 glycine rich protein 2, glycin... Potri.001G319900
[exp]
23.91 0.7354
AT5G12240 unknown protein Potri.001G274400
[exp]
26.17 0.6676
AT3G49470 NACA2 nascent polypeptide-associated... Potri.012G006700
[exp]
26.40 0.7363

Potri.001G344000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.