Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14500 501 / 0 aldose 1-epimerase family protein (.1) AT3G01590 496 / 4e-179 Galactose mutarotase-like superfamily protein (.1.2) AT5G57330 402 / 1e-141 Galactose mutarotase-like superfamily protein (.1) AT3G61610 364 / 1e-126 Galactose mutarotase-like superfamily protein (.1) AT4G23730 348 / 2e-120 Galactose mutarotase-like superfamily protein (.1) AT4G25900 304 / 4e-103 Galactose mutarotase-like superfamily protein (.1) AT5G66530 140 / 2e-39 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 51 / 3e-07 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165400 [exp] 420 / 8e-149 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 417 / 1e-147 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 410 / 1e-144 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 404 / 1e-142 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 385 / 4e-135 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 362 / 7e-126 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 152 / 6e-44 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 47 / 8e-06 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032084 [exp] 531 / 0 AT5G14500 494 / 2e-176 aldose 1-epimerase family protein (.1) Lus10014621 [exp] 528 / 0 AT5G14500 490 / 2e-176 aldose 1-epimerase family protein (.1) Lus10020015 [exp] 417 / 1e-147 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 412 / 2e-145 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 395 / 1e-138 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 387 / 3e-135 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 385 / 8e-135 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 378 / 3e-132 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 375 / 5e-131 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 369 / 1e-128 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.001G344100.6 pacid=42793687 polypeptide=Potri.001G344100.6.p locus=Potri.001G344100 ID=Potri.001G344100.6.v4.1 annot-version=v4.1 ATGCCGTTGAATATGGTTCATGATGCTGATGGACTGCCAAGGATTCTTTTGACTGACCCTACTGGCTCTTCTGCTGAGGTGCTTTTGTATGGCGGGCAGG TTGTTTCATGGAAGAATGAACGAAGAGAGGAACTACTTTTTATGAGCAGCAAGCAGGCAATTTGGAAGCCACCAAAAGCCATCGGGGGAGGCATTCCTGT CTGCTTTCAACAGTTAGGGAATCTTGGTTCATTGGAGCGACATGGGTTTGCAAGGAACAAATTGTGGTCATTGGACAATGACCCTTCACCTCTGCCTCCA ACAAACAATCAGTCATCAGTGGATCTGATATTGAAGTCCACAGAAGAGGATCTGAAAACCTGGCCTAAAAGCTTTGAGCTGCGGCTTCGTATCACTCTCA GTGCTAGCAAGCTCACTTTGATATCTCGTGTGAGAAATACAGATAACAGGCCCTTCTCCTTCACTTTTGCACTGCGTAACTACTTATCTGTATCAGATAT CAGCGAAGTGCGTGTCGAGGGATTGGAGACACTTGATTACTTAGATAATCTAATGCACAAAGAAAGGTTCACTGAGCAGGCAGATGCGATTACCTTTGAT GGCGAGGTTGACAGGGTATATTTGAGCACCCCCTCAAAGATTGCCATCATAGATCATGAAAAAAAGAGAACCTTTGTACTGCGGAAAGATGGGATGCCAG ATGCAGTTATGTGGAATCCTTGGGACAGAAAGGCCAAGGCTCTCCCAGATATGGGGGATGAAGACTACAAAAGCATGTTGTGCGTGGATTCAGCTTCTAT TGAAACCCCAATTGCCTTGAAACCTTTTGAGGAGTGGAAGGGCTACCAAGAACTCTCTACTGTGTCATCAAGTTATTGCAGTGGTCAATTGGATCCTCGA AGGGTTCTATATGGCTTTCACTGA
AA sequence Show only first row Show all	>Potri.001G344100.6 pacid=42793687 polypeptide=Potri.001G344100.6.p locus=Potri.001G344100 ID=Potri.001G344100.6.v4.1 annot-version=v4.1 MPLNMVHDADGLPRILLTDPTGSSAEVLLYGGQVVSWKNERREELLFMSSKQAIWKPPKAIGGGIPVCFQQLGNLGSLERHGFARNKLWSLDNDPSPLPP TNNQSSVDLILKSTEEDLKTWPKSFELRLRITLSASKLTLISRVRNTDNRPFSFTFALRNYLSVSDISEVRVEGLETLDYLDNLMHKERFTEQADAITFD GEVDRVYLSTPSKIAIIDHEKKRTFVLRKDGMPDAVMWNPWDRKAKALPDMGDEDYKSMLCVDSASIETPIALKPFEEWKGYQELSTVSSSYCSGQLDPR RVLYGFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14500			aldose 1-epimerase family prot...		Potri.001G344100 [exp]	0	1
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031700 [exp]	2.44	0.8993	Pt-CYP94.6
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.013G109500 [exp]	3.16	0.8930	SAT.2
AT1G68220			Protein of unknown function (D...		Potri.008G124100 [exp]	6.16	0.8627
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	8.36	0.8707
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G162500 [exp]	9.32	0.8905
AT5G53280		PDV1	plastid division1 (.1)		Potri.015G022900 [exp]	11.22	0.8657
AT3G53220			Thioredoxin superfamily protei...		Potri.006G123100 [exp]	11.22	0.8841
AT5G06130			chaperone protein dnaJ-related...		Potri.006G210500 [exp]	12.00	0.8757
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	18.76	0.8646
AT1G22160			Protein of unknown function (D...		Potri.005G168900 [exp]	22.51	0.8672

Compare expression of checked genes

Potri.001G344100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.