Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14510 311 / 4e-105 ARM repeat superfamily protein (.1) AT4G12710 187 / 5e-56 ARM repeat superfamily protein (.1) AT3G03440 125 / 1e-32 ARM repeat superfamily protein (.1) AT3G01400 98 / 5e-23 ARM repeat superfamily protein (.1) AT3G54790 94 / 6e-21 ARM repeat superfamily protein (.1.2) AT5G58680 91 / 2e-20 ARM repeat superfamily protein (.1) AT1G67530 85 / 8e-18 ARM repeat superfamily protein (.1.2) AT2G23140 84 / 2e-17 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT2G25130 81 / 1e-16 ARM repeat superfamily protein (.1) AT5G67340 79 / 9e-16 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170100 [exp] 194 / 8e-59 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.004G088800 [exp] 144 / 9e-40 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.017G128100 [exp] 141 / 1e-38 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.002G037700 [exp] 100 / 3e-23 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 100 / 4e-23 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G144700 [exp] 91 / 5e-20 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 89 / 4e-19 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G058000 [exp] 88 / 6e-19 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 85 / 2e-18 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022275 [exp] 321 / 1e-108 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1) Lus10002521 [exp] 305 / 1e-102 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10041090 [exp] 184 / 3e-55 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10036415 [exp] 181 / 1e-50 AT2G04280 828 / 0.0 unknown protein Lus10033593 [exp] 135 / 9e-36 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10017635 [exp] 119 / 2e-30 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10007738 [exp] 96 / 4e-22 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10024899 [exp] 94 / 7e-21 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 91 / 3e-20 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10022919 [exp] 92 / 4e-20 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.001G344200.1 pacid=42789747 polypeptide=Potri.001G344200.1.p locus=Potri.001G344200 ID=Potri.001G344200.1.v4.1 annot-version=v4.1 ATGGAGGGATTTGTAGCTCAAAATCTTTGCAATGGTAGCAGAGAAGTGAGGATTCAGGCTGCCACTCAACTTGGAAAACTTAATGCTAAGCAAAGGCACA AGTTGGCTGAACGAGGAGTCATTGATCCTTTGATTTCAATGCTTCAGTCTCAAGATTATGAAGCCATTGAAGCTGCTCTCTTTGCTTTGCTCAGCCTTGC CTTTGGCAATGAAAGAAACAAGATCCGAATCGTGAAATTGGGGGTGATACCTGTGCTGCTAGAGCTCCTCCAAAGTCAAAACGAGTCACTGACGGAACTC ATACTAGCAGCTTTCCTAGTCATCTCTTCTTGTGGGGCGAACAAGCTCGCAATCGCGGCTTCTGGGGCTATCTCTGTCCTTGTTAAGATCCTCGGAGGAG AATATGATGACACAGACAGCATTAGCATGCAGGCCAAACTTGACGCTGTAGCAACTCTTCACAATCTCTCAAGTTGCCATCAGATTATTCCATCAATAGT TTCCTCTGGTATAGTTTTTACCTTGCTTCAACTTATTCACAGCTACGAAAAGTCCTCGGAGTTGGTTGACAAGGCAATGGCACTTCTTGAAGATATCATT GCTTCATCAGAGAATGCACTGGCTCAAACTTCTGGTGCAGGAGATGCAATTCGGGCATTCGTAGAAACAATTGAAGAGGGTACTCCCCAATGCAAAGAGC ATGCAGTGGGAATTCTCCTCCTCATCTGCCAGAGCTGCAGAGATAAGTACAGAGGGCTGATTTTAAGGGAAGGTGTGATTCCAGGGCTGCTTCAGTTGAG TGTGGATGGAACATGGAGGGCTAAGGAGAAAGCCAAACAGCTATTGCTGCTTTTGAGGGACTGTACAAGTTATCGGTCAAGAGCTAAACAATCAAAGCAT GAGCTTGTAGAGCAGATTATGCAAGAAATTGATGCAGAGGGAGAGAAAGTAATGGGAACAAAAGCACTTAGGCTAGTAGAGGATATGATTGCAAAGCTCA GTACATGA
AA sequence Show only first row Show all	>Potri.001G344200.1 pacid=42789747 polypeptide=Potri.001G344200.1.p locus=Potri.001G344200 ID=Potri.001G344200.1.v4.1 annot-version=v4.1 MEGFVAQNLCNGSREVRIQAATQLGKLNAKQRHKLAERGVIDPLISMLQSQDYEAIEAALFALLSLAFGNERNKIRIVKLGVIPVLLELLQSQNESLTEL ILAAFLVISSCGANKLAIAASGAISVLVKILGGEYDDTDSISMQAKLDAVATLHNLSSCHQIIPSIVSSGIVFTLLQLIHSYEKSSELVDKAMALLEDII ASSENALAQTSGAGDAIRAFVETIEEGTPQCKEHAVGILLLICQSCRDKYRGLILREGVIPGLLQLSVDGTWRAKEKAKQLLLLLRDCTSYRSRAKQSKH ELVEQIMQEIDAEGEKVMGTKALRLVEDMIAKLST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14510			ARM repeat superfamily protein...		Potri.001G344200 [exp]	0	1
AT3G47180			RING/U-box superfamily protein...		Potri.002G080900 [exp]	1.41	0.9657
AT3G26350			unknown protein		Potri.010G049000 [exp]	1.73	0.9759
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G030900 [exp]	3.16	0.9335
AT4G05430			Carbohydrate-binding X8 domain...		Potri.007G111000 [exp]	4.47	0.9472
AT3G47180			RING/U-box superfamily protein...		Potri.005G180300 [exp]	4.89	0.9144
AT5G38895			RING/U-box superfamily protein...		Potri.010G140300 [exp]	6.63	0.9021
					Potri.003G151900 [exp]	6.92	0.8686
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.016G042700 [exp]	7.07	0.8670
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.003G072000 [exp]	7.74	0.9260
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.016G035400 [exp]	8.94	0.8608

Compare expression of checked genes

Potri.001G344200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.