Plant FIBer expression Database

Potri.001G344400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40510 358 / 2e-122 Sucrase/ferredoxin-like family protein (.1)
AT3G27570 345 / 1e-116 Sucrase/ferredoxin-like family protein (.1)
AT4G26620 299 / 9e-98 Sucrase/ferredoxin-like family protein (.1)
AT5G55900 279 / 2e-90 Sucrase/ferredoxin-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G369300
[exp]
303 / 9e-100 AT4G26620 515 / 0.0 Sucrase/ferredoxin-like family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022274
[exp]
416 / 7e-145 AT5G40510 358 / 4e-123 Sucrase/ferredoxin-like family protein (.1)
Lus10002520
[exp]
359 / 5e-122 AT5G40510 328 / 4e-110 Sucrase/ferredoxin-like family protein (.1)
Lus10016627
[exp]
290 / 4e-94 AT4G26620 489 / 8e-172 Sucrase/ferredoxin-like family protein (.1)
Lus10022532
[exp]
274 / 9e-88 AT4G26620 469 / 1e-163 Sucrase/ferredoxin-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06999 Suc_Fer-like Sucrase/ferredoxin-like
Representative CDS sequence
>Potri.001G344400.1 pacid=42792979 polypeptide=Potri.001G344400.1.p locus=Potri.001G344400 ID=Potri.001G344400.1.v4.1 annot-version=v4.1
ATGCGCATTGCGCACCCTGCCCGCTCTCTCATATCCTTCACCCTCAATTTCTCTTCCCCTCCACCAACCAAACCTCTCTCTTTTCACTCTCTGACTTCAA
AAACAACAGAGAGACCACGACTACGTGTCTTTCAATTTTCGATGGAGAAGACGGAGAATGTTTCCACAACGGCGACCGAGGACGCCGCCAATTACGGGTT
CACTCGATCGGAGATGTACAAGTCCAACCTCGCTGGAACTGTTGGTCCTTATGACAGACACGTGTTCCTTTGCTTCAAGAACCCTGATGCGTGGCTACCT
CATGTTGAGGAAGATGATCTACCGAAACTCGTCGCCACCGCTTTGAAAACTCGCAAAAACGACATCACTGTCAAGACGAAGGTGACGATCTGCGAAGGAG
GAGAAGGAAGCGAGTTTGAGAACGGAGATGTTTTGATATTTCCTGACATGATTAAATACAAGGATTTGAAGGACTCTGATGTCGATGGTTTTGTTGATGA
TGTACTCGTGAGTGGCAAACCATGGGCCTCCGGGGTGCAGGAGGTGTTGACAGGTTCGCATGTATTTGTGTGCGCTCATGGCAGTCGTGATAAGAGATGT
GGTGTTTGTGGACCGGTTCTTATTGAAAAGCTCAAAGAGGGAATTGAGTCTCGAGGGTTGAACGACAAAGTTTTTGTTAGTGCCTGTTCTCATGTTGGGG
GGCATAAATATGCTGGGAACCTGATAATCTATAGTCCGAATTCAGAGGGAAAAACCATGGGTCATTGGTATGGCTATGTTACTCCTGAAGATGTGCCTGA
AATATTGGATCAGCATATTGAGAAGGGAATAGTTATAGAACGGATTTGGAGGGGCCAAATGGGGTTATCAACTGAAGAAGGCGAGAAAGTTGGGGAACAA
AAGCTTCGAAATGGAAAAGATAAGACCAAGAGCAAGAAGCCTGAAGAAAACAGCGCTGAGGCCGCTAAGGACAATGTGGCCAGCTGTTGCCAGGGTGCTA
ATGGCTTTTCATGCTGCAGAGATGGGAGTTCGGAGATAATTAAAGAAAAGAAACTGGAGGAGAACATTGAAGGGCATGGAAAGGGGGGGCTGGATAAACT
ATCAAGGTGGATAGGATCACTGGAGCAAGGTGATGTTCTTGCAGCAGGTGCTGTAGTTGGAGCGGTAGCGACTATTGCAGTGGCTTATAGCTTTTATAAA
AGGTCAGGCTAA
AA sequence
>Potri.001G344400.1 pacid=42792979 polypeptide=Potri.001G344400.1.p locus=Potri.001G344400 ID=Potri.001G344400.1.v4.1 annot-version=v4.1
MRIAHPARSLISFTLNFSSPPPTKPLSFHSLTSKTTERPRLRVFQFSMEKTENVSTTATEDAANYGFTRSEMYKSNLAGTVGPYDRHVFLCFKNPDAWLP
HVEEDDLPKLVATALKTRKNDITVKTKVTICEGGEGSEFENGDVLIFPDMIKYKDLKDSDVDGFVDDVLVSGKPWASGVQEVLTGSHVFVCAHGSRDKRC
GVCGPVLIEKLKEGIESRGLNDKVFVSACSHVGGHKYAGNLIIYSPNSEGKTMGHWYGYVTPEDVPEILDQHIEKGIVIERIWRGQMGLSTEEGEKVGEQ
KLRNGKDKTKSKKPEENSAEAAKDNVASCCQGANGFSCCRDGSSEIIKEKKLEENIEGHGKGGLDKLSRWIGSLEQGDVLAAGAVVGAVATIAVAYSFYK
RSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G40510 Sucrase/ferredoxin-like family... Potri.001G344400
[exp]
0 1
AT4G28910 NINJA novel interactor of JAZ (.1.2.... Potri.018G085100
[exp]
1.00 0.9051
AT1G02330 unknown protein Potri.014G110200
[exp]
4.89 0.8280
AT1G51760 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IA... Potri.003G045200
[exp]
6.70 0.8500 IAR3.1
AT2G34630 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE,... Potri.006G135300
[exp]
8.36 0.8271
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.013G025000
[exp]
10.19 0.8626 Pt-HAP5.3
AT2G43790 ATMAPK6, MAPK6,... MAP kinase 6 (.1) Potri.007G139800
[exp]
10.58 0.7777 Pt-MPK6.1
AT5G40010 ASD, AATP1 ATPase-in-Seed-Development, AA... Potri.004G091300
[exp]
14.14 0.8479
AT3G19910 RING/U-box superfamily protein... Potri.005G090800
[exp]
15.29 0.8427
AT5G40490 RNA-binding (RRM/RBD/RNP motif... Potri.001G344900
[exp]
20.63 0.7894
AT4G35260 IDH-I, IDH1 isocitrate dehydrogenase I, is... Potri.009G165200
[exp]
21.16 0.8424

Potri.001G344400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.