Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PK7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27580 647 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G47750 635 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G55910 614 / 0 D6PK D6 protein kinase (.1) AT4G26610 612 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT2G44830 570 / 0 Protein kinase superfamily protein (.1) AT5G40030 540 / 0 Protein kinase superfamily protein (.1) AT1G79250 512 / 1e-175 AGC1.7 AGC kinase 1.7 (.1.2) AT1G16440 494 / 2e-169 RSH3 root hair specific 3 (.1) AT3G12690 494 / 4e-168 AGC1.5 AGC kinase 1.5 (.1.2.3) AT3G52890 503 / 7e-167 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003800 [exp] 668 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 667 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.002G137700 [exp] 597 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 597 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 560 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 513 / 1e-175 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.010G175900 [exp] 513 / 3e-175 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 519 / 5e-173 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 514 / 2e-172 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022272 [exp] 770 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10016629 [exp] 640 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 633 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 632 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 576 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10022534 [exp] 572 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10032185 [exp] 535 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 533 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10002518 [exp] 525 / 0 AT3G27580 504 / 3e-175 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10020571 [exp] 498 / 5e-168 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G344600.5 pacid=42792427 polypeptide=Potri.001G344600.5.p locus=Potri.001G344600 ID=Potri.001G344600.5.v4.1 annot-version=v4.1 ATGGAGTCGTTTGTCAATGGGATTGAATCTTCATCACAGACTCAGAATTCAGCATCTAAAGTAGGCAGCCACCCGCTTTCCACATCTGTCATGTCTCGCC CTTCTCGGCCTCCAACTCTGAAACAGTCTAGACATGAAGGGGCTTCTTCCGGTGCATGCTATGCAAGTTCATCCAATCATGGCATCAAGACTGTCCACCA TTCAAATGGTTCTGTAATCTATCCGAAGAATTCCTACAAAACAGCGCATGATGGTATCCGGCATGAAGAATTTCTTAGTACGGCAAAATATTTCTTTAGT CCTCATAAGGGCAAATCTGAGTTTGCAAGCTCGACTGAAGTTGTTAGTCAATCAGCAGAATCTTCTCCTGAGAATAAGGTTTCTATGGCGGAGAACAATT CCTGCATCAAACCTCCCATGGATGATCCAAAGAGCTCTAATTCCAGTGGCTCACTTGAATCTGGAAGTATTGTCTCAGGCCCATCCGAAGCAGATGCTGG GCAGCTTAACAATCACATAGTATCTCAATCAGCTTTAAGCTTCTGTCCAAGTCCTTCAAACAGCATCTATACTGCCACTCTCTATGCAGAGGCCAAACAA AGTTTCACCAACACAGAAGTAAGTGAAGAAGCAAGCATTGTTGAGAAGTCTGTTGAAAGTGGTGAGGTAAGCAACTCCTATGATAACGAGAGCAGGAAAA TGAGCCTCTATAGAGGCAGCACTGATAGTGATATTAGTGATGAAAGCAGTTCCAGTAGTTTAAGCAGTGCATTATACAAGCCCCACAAGGCAAATGATAT AAGATGGGAAGCAATTCAAGCTGTCAGATCTCATGCGGGAGCATTGGGGTTCAATCACTTTAAATTGTTGAAGAGACTAGGATGTGGAGATATAGGCAGT GTTTATCTATCAGAGTTGAGTGGTACTAGAACTTGTTTTGCAATGAAAGTTATGGATAAAGCAGCTCTAGCTGCACGGAAAAAGCTTTTAAGGGCTCAGA CTGAACGAGAGATCCTTCAATCTCTGGATCATCCATTTCTACCCACGCTATATTCACATTTTGAAACAGAAAAGTTCTCTTGCTTGTTAATGGAGTTCTG CCCTGGTGGGGACTTGCATGCACTGAGGCAACGCCAACCTGGGAAGTACTTTCCAGAGCATGCTGCCAGGTTTTATGTTGCAGAAGTGCTCCTTGCTTTG GAATACTTGCACATGCTTGGGATCATTTACAGAGACCTCAAACCAGAGAATGTTTTGGTGAGGGAAGATGGACATATAATGCTTTCAGATTTTGATCTCT CTCTAAGATGTGCTGTCTGCCCTACTCTGGTAAAATCATCGAACACCAGCTCAGAGTCGAAGAATTCAGCGTATTGTGTGCAGCCTGCCTGCATTGAGCC AACTTGTGTAATACAACCAGATTGCATTCAGCCAGCATGTTTTGGACCACGCTTCTTCTCAACCAAGGCCAAGAAAGGTAAAAAGAGCAAGTCTAAGAAT GAGATGAATCATCAAGTAAACCCTCTGCCTGAGCTCATGGCCGAACCCACAAATGCTCGTTCAATGTCTTTTGTGGGTACGCATGAGTACTTGGCCCCTG AAATAATTAAAGGTGAGGGCCATGGAAGTGCTGTAGATTGGTGGACATTTGGGATATTTCTCTATGAGCTTTTGTTTGGTAAAACTCCTTTCAAGGGAGC AGGAAATCGAGCTACACTATTTAATGTGGTTGGCCAGCCATTAAGATTTCCAGAATCACCTACTGTGAGCTTTGCAGCTAGGGACTTGATAAGAGGTTTA CTCGTGAAGGAGCCACAGCATCGTCTTGCTTATAGACGGGGAGCCACTGAAATAAAACAGCATCCATTCTTTCAGAGCATCAATTGGGCGCTCATTCGTT GTACAAATCCTCCGGAGGTGCCAAAACAAGCAATAATGGAATTTCTAATGAGAGCTGATTCTCCAAAAGCCCCCACAGATGTGAACGTGCCAGGTGTTGA TGTGAAGCCTTCTGGTAATTATTTAGAGATAGATTTCTTTTAG
AA sequence Show only first row Show all	>Potri.001G344600.5 pacid=42792427 polypeptide=Potri.001G344600.5.p locus=Potri.001G344600 ID=Potri.001G344600.5.v4.1 annot-version=v4.1 MESFVNGIESSSQTQNSASKVGSHPLSTSVMSRPSRPPTLKQSRHEGASSGACYASSSNHGIKTVHHSNGSVIYPKNSYKTAHDGIRHEEFLSTAKYFFS PHKGKSEFASSTEVVSQSAESSPENKVSMAENNSCIKPPMDDPKSSNSSGSLESGSIVSGPSEADAGQLNNHIVSQSALSFCPSPSNSIYTATLYAEAKQ SFTNTEVSEEASIVEKSVESGEVSNSYDNESRKMSLYRGSTDSDISDESSSSSLSSALYKPHKANDIRWEAIQAVRSHAGALGFNHFKLLKRLGCGDIGS VYLSELSGTRTCFAMKVMDKAALAARKKLLRAQTEREILQSLDHPFLPTLYSHFETEKFSCLLMEFCPGGDLHALRQRQPGKYFPEHAARFYVAEVLLAL EYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVCPTLVKSSNTSSESKNSAYCVQPACIEPTCVIQPDCIQPACFGPRFFSTKAKKGKKSKSKN EMNHQVNPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGAGNRATLFNVVGQPLRFPESPTVSFAARDLIRGL LVKEPQHRLAYRRGATEIKQHPFFQSINWALIRCTNPPEVPKQAIMEFLMRADSPKAPTDVNVPGVDVKPSGNYLEIDFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Potri.001G344600 [exp]	0	1	PK7.1
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	3.16	0.7611
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	7.00	0.7756
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	15.00	0.7491
AT4G35560		DAW1	DUO1-activated WD40 1, Transdu...		Potri.005G101600 [exp]	16.12	0.6630
AT5G09800			ARM repeat superfamily protein...		Potri.005G057500 [exp]	17.14	0.7221
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	17.43	0.7333
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	18.13	0.7338
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	18.16	0.7562
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	19.05	0.7285
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.005G233600 [exp]	19.28	0.7481

Compare expression of checked genes

Potri.001G344600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.