Plant FIBer expression Database

Potri.001G344800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09580 540 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027764
[exp]
538 / 0 AT3G09580 547 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10035530
[exp]
535 / 0 AT3G09580 543 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10033264
[exp]
62 / 2e-11 AT3G09580 87 / 6e-21 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.001G344800.3 pacid=42791459 polypeptide=Potri.001G344800.3.p locus=Potri.001G344800 ID=Potri.001G344800.3.v4.1 annot-version=v4.1
ATGACTACTCTCGCTCTTGCCCATTCTCTCCCCTGCTCATCCTCCAAAAAACACCTCCCTTTCAGATTCATAGCCCATGCTTCCACACAACTCTCCCCAG
CCTCTCTGAAACAGCAACTTTCCCACCAAAAAACCGGAGTCATTGTTATCGGAGCCGGCCTTGCAGGTCTAGCTACCGCAACCAGGCTAAACTCTCAAAA
CATCCCCTTCCTCCTGCTTGAGGCTTCTGATGCTGTTGGTGGCCGAGTTAGGACTGACGTTGTTGATGGTTTCCTCCTCGACCGAGGCTTCCAAATCTTC
ATCACTGCGTATCCCGAGGCCCAAAGACTTCTTGACTATCAAGCACTGGAGCTACAGAAATTCTACTCAGGTGCCCGCATCTACTTTGATGGCCGGTTCC
ATACTGTGGCTGATCCTTTATGCCACTTTTTCGATTCTGTCAAGTCCTTAACCAACCCCATAGGATCCGTTATCGACAAATTGCTTATCGCGTTGACAAG
GATTCAGGTCCTGAGTAAATCGGATGATGAAATCATGCGTGCTGATGAGGTTCCTACTATTGATCTCCTAAAGAGAATTGGGTTTTCGGATTCGATAGTG
GAACGCTTTTTCCAGCCTTTCTTTGGTGGCATATTTTTTGATAAAGAGCTCGGAACTACTTCAAGACTGTTCGACTTTATATTCAAGTGTCTCGCTCTCG
GCAACAATACCCTTCCTGCCAAAGGAATCGGAGCCATTCCAAATCAATTAGCATCCAAGCTGCCAGCTGATTCCATCTTGTTGAATACAAGAGTTGTTTC
TGTTGGTCTAGACGAGGATCAAAACACACCAATGCCCTTTGTTAGACTGGAAAATGGAGATATTCTACAAAGCGAGCTTGGAGTGATTGTGGCTGTTGAA
GAACCACACGTTAACGAGCTCTTGGCAGAAATTAACAGTATTGGGCCAGTTCAAAGTAAAAAACCTGCTCGCAGTACGGTGTGTTTGTATTTCTCAGCAG
ACAGGGATGATATACCTGTTCGAGACCCAGTTCTGTTCCTTAATGGTTCAGGCGAAGGCATTGTAAATAACATGTTCTTTGCGACCAATGTAGCTCCATC
CTATGGTCCACCTGGGAAGGCATTGGTATCAGTGACTCTGATTGGGTTGTTCGATGATACATCCGATCATGATCTAGTAGACGAGGTTATTTCGGAGCTA
TCAGGTTGGTTTGGAGGCTCGATGGTCGGGTCGTGGAAGCCCTTGAGAACGTATAGGGTCAGATACGCACAACCAAATCAATGCCCTCCTACTAATTTGA
TGAAAAACCCTCAAATTGGGTCAGGTCTATACTTGTGTGGCGATCACTTGACTTCTGCTACCTTCGATGGTGCATTGGCTTCCGGAAGAAAAGCTGCAGA
AGCTTTGTTAAGAGATAGGGCATTCATCAAGGTTTAA
AA sequence
>Potri.001G344800.3 pacid=42791459 polypeptide=Potri.001G344800.3.p locus=Potri.001G344800 ID=Potri.001G344800.3.v4.1 annot-version=v4.1
MTTLALAHSLPCSSSKKHLPFRFIAHASTQLSPASLKQQLSHQKTGVIVIGAGLAGLATATRLNSQNIPFLLLEASDAVGGRVRTDVVDGFLLDRGFQIF
ITAYPEAQRLLDYQALELQKFYSGARIYFDGRFHTVADPLCHFFDSVKSLTNPIGSVIDKLLIALTRIQVLSKSDDEIMRADEVPTIDLLKRIGFSDSIV
ERFFQPFFGGIFFDKELGTTSRLFDFIFKCLALGNNTLPAKGIGAIPNQLASKLPADSILLNTRVVSVGLDEDQNTPMPFVRLENGDILQSELGVIVAVE
EPHVNELLAEINSIGPVQSKKPARSTVCLYFSADRDDIPVRDPVLFLNGSGEGIVNNMFFATNVAPSYGPPGKALVSVTLIGLFDDTSDHDLVDEVISEL
SGWFGGSMVGSWKPLRTYRVRYAQPNQCPPTNLMKNPQIGSGLYLCGDHLTSATFDGALASGRKAAEALLRDRAFIKV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09580 FAD/NAD(P)-binding oxidoreduct... Potri.001G344800
[exp]
0 1
AT3G26710 CCB1 cofactor assembly of complex C... Potri.001G463200
[exp]
5.47 0.9322
AT1G16080 unknown protein Potri.003G185901
[exp]
7.34 0.9088
AT5G35630 ATGSL1, GLN2, G... GLUTAMINE SYNTHETASE LIKE 1, g... Potri.010G029100
[exp]
16.88 0.8963 NCPGS.7
AT2G21530 FHA SMAD/FHA domain-containing pro... Potri.009G156700
[exp]
17.32 0.9265
AT2G21530 FHA SMAD/FHA domain-containing pro... Potri.009G156900
[exp]
21.81 0.9227
Potri.001G230200
[exp]
22.62 0.9129
AT5G08280 HEMC hydroxymethylbilane synthase (... Potri.007G072500
[exp]
22.80 0.9076
AT1G16080 unknown protein Potri.003G185754
[exp]
24.61 0.9200
AT3G63540 Mog1/PsbP/DUF1795-like photosy... Potri.009G062500
[exp]
25.09 0.9223
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Potri.002G195200
[exp]
25.39 0.8987 CLPP5.2

Potri.001G344800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.