Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 258 / 2e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 186 / 1e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 162 / 1e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 157 / 1e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 156 / 1e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 152 / 6e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 153 / 8e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G33410 146 / 6e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 131 / 9e-35 XF41, ATRBP1 RNA-binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G064901 [exp] 283 / 5e-96 AT3G13224 216 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G370300 [exp] 276 / 7e-91 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 201 / 7e-61 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G040900 [exp] 199 / 4e-60 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 168 / 7e-48 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 166 / 4e-47 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 164 / 1e-46 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 164 / 2e-46 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G361300 [exp] 157 / 2e-43 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032124 [exp] 310 / 3e-103 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014562 [exp] 306 / 3e-101 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032595 [exp] 260 / 4e-84 AT3G13224 357 / 2e-122 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043154 [exp] 259 / 1e-83 AT3G13224 361 / 5e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 161 / 3e-45 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039054 [exp] 160 / 8e-45 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 159 / 3e-44 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 159 / 4e-44 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 159 / 4e-44 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 159 / 4e-44 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G344900.2 pacid=42790482 polypeptide=Potri.001G344900.2.p locus=Potri.001G344900 ID=Potri.001G344900.2.v4.1 annot-version=v4.1 ATGGACCCACACCACAACGAACCCATTCACGACGGTGAACCTAACGACGTTAAATCCACCCACATCCCAAAAGATGACAAGCCTCAACCCCTCTCTGGAG ATGGAGCTAGCCCCGGAAAAATTTTCATTGGAGGTTTAGCAAGAGAGACTACTACTGCACAATTCATCAAACATTTTGGTAAATACGGTGAAATTACGGA TTCCGTGATAATGAAGGACCGGAAGACAGGGCAGCCCCGTGGATTTGGCTTTGTGACCTATGCAGATCCATCTGTTGTTGATCAAGTCATTCAGGATACT CATATTATCAATGGCAAACAAGTTGAAATCAAGCGAACAATACCAAAGGGAGTGGTTGGGTCTAAGGATTTTAGGACCAGAAAGATTTTTGTTGGTGGAA TACCTGCGGTTGTGACTGAAGATGAGTTCAATGAATTCTTTACACAATTCGGAGAGGTTACAGAACATCAGATCATGCGGGACCACTCCACCAATCGTTC TCGTGGGTTTGGATTTATTACATTTGATACAGAGCAGGCAGTTGATGATCTGTTGGCCAGGGGAAATAAACTCGAGCTGGCTGGAACTCAGGTGGAGATC AAGAAGGCTGAGCCAAAGAAGGCAAACCCGCCTCCACCTCCATCAAAGCGTTATAATGATTCAAGGCCTGCGTTTCGTGGTGGGTTTGATGATGCTTATG GTGGATTTGGAGGCAGTGGATTTGGTAGCGTTGGTGGTGGTTATAGGTCTGGAGGGGCCTACGGAAGTAGAGCTGGTGCTTATAGTGGATATGGTGGAGG TGAATTTGGTGGCTATGGAGGATACGGAGTTGGGGGTATTGGTGCTTACAGGGGAGAGCCTTCCTTGGGATATACTGGTCGTTATGGAGGACTGTACAGC AGAGGTTATGATTTAGGTGGTGGGGGTTATGGTGGCCCTGGTGAGAATTATGGCGGATATGGTGGTGGCAGTGGTGGTGGTGGTTCTGCCAGCGGCTATG GAGGTAGCTATGACACTGGTCTTGGAGGTGGCTATGGAGGTAATGGTGGAGGTTCCATGTATGGAAGCAGAGTGGGATATGGTGGTGCTGGGAGTGGTAG GTATCATCCTTATGGGAGATAG
AA sequence Show only first row Show all	>Potri.001G344900.2 pacid=42790482 polypeptide=Potri.001G344900.2.p locus=Potri.001G344900 ID=Potri.001G344900.2.v4.1 annot-version=v4.1 MDPHHNEPIHDGEPNDVKSTHIPKDDKPQPLSGDGASPGKIFIGGLARETTTAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDQVIQDT HIINGKQVEIKRTIPKGVVGSKDFRTRKIFVGGIPAVVTEDEFNEFFTQFGEVTEHQIMRDHSTNRSRGFGFITFDTEQAVDDLLARGNKLELAGTQVEI KKAEPKKANPPPPPSKRYNDSRPAFRGGFDDAYGGFGGSGFGSVGGGYRSGGAYGSRAGAYSGYGGGEFGGYGGYGVGGIGAYRGEPSLGYTGRYGGLYS RGYDLGGGGYGGPGENYGGYGGGSGGGGSASGYGGSYDTGLGGGYGGNGGGSMYGSRVGYGGAGSGRYHPYGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Potri.001G344900 [exp]	0	1
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Potri.002G213600 [exp]	2.44	0.8066
					Potri.001G078409 [exp]	6.55	0.8120
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	6.92	0.7993
					Potri.003G068350 [exp]	10.72	0.7541
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.005G074900 [exp]	19.26	0.7315	Pt-UBP3.2
AT5G40510			Sucrase/ferredoxin-like family...		Potri.001G344400 [exp]	20.63	0.7894
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.010G254400 [exp]	21.00	0.7004
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	22.95	0.7472
AT1G43690			ubiquitin interaction motif-co...		Potri.005G191300 [exp]	23.23	0.7026
AT3G51370			Protein phosphatase 2C family ...		Potri.005G108500 [exp]	26.66	0.8014

Compare expression of checked genes

Potri.001G344900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.