Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40480 2192 / 0 EMB3012 embryo defective 3012 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022271 [exp] 2183 / 0 AT5G40480 1883 / 0.0 embryo defective 3012 (.1) Lus10002516 [exp] 550 / 1e-179 AT5G40480 503 / 3e-163 embryo defective 3012 (.1) Lus10002517 [exp] 74 / 4e-15 AT5G40480 76 / 5e-17 embryo defective 3012 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G345100.1 pacid=42791539 polypeptide=Potri.001G345100.1.p locus=Potri.001G345100 ID=Potri.001G345100.1.v4.1 annot-version=v4.1 ATGAAGGTGCTGCGTTTTGCTGCGTTTTTGGTAGCTTTCACTACTCTCATTGTCGTCGGCAAAACGACGTCACATTTGAGCCCCGGACCTCACGTCACCG ATGTCAATATTCTGTTGCCTCCTAAAATGACGCGTCCCGTCGAGTATCGCCTCCAAGGAAGTGATGGCTGCTTTAAATGGTCATGGGATCATCACGATAT TCTATCAGTTATACCTGAGTATAATTTAAGCTACAGCCACTGTTCAACCAGTGCACGGTTGAGATCAATTGCTCCCTTTACCGGTCGGAAGGAGACAGCT ATTTATGCTGCTGATGTACACACTGGCATTGTGATTCGCTGCAAGGTCTTTATTGACAATATTTCCAGAATCCAGATATTTCACAATTCTATTAAACTTG ATTTAGATGGTCTTGCTACTCTCCGAGCTCGCGCCTTCGATCGTGAAGATAATGTGTTTTCGTCATTAGCTGGATTACAATTCATGTGGCAGCTGATGCC TGAAACGGATGGATTGCCGCACCACCTTGTCCATGTTCCTCTCAGGGATTCTCCGCTCAGTGATTGTGGTGGTTTATGTGGTGATTTGAACATCCAAATA GAACTTGAAGATAGTGGTGTATTCTCGGATTTGTATGTTGTGAAAGGAGTCGAAATTGGCCATGAGAATGTTTCGGTGCATTTGCTTGAGCCACAATTTA AGCACTTGGCTGATAAGATTGTTCTAACTGTGGCAGAAGCCATGTCACTTGAACCTCCCTCACCTGTTTTGGTCCTCATTGGTGCTGCCTTTCGATATAC GCTCAAAGTCATTCGTGGGAATATTCTGCAAGTGGTTGCTCTTCCATCTCCACATCATAGGTGGTCTGTTTTGAACTCTTCGGTTGCTGAAGTGGACCAC TTGTCAGGCTTTGCTCAGGCACTGAGCTTAGGGGTAACATCTGTCATTGTCAAAGATACTAGAGTTGCTGGCCATATGCAAGTTTCATCACTTAATGTGG TTCTACCTGACACTTTGTGCTTATTTATAATGCCCTTGCCTGTTTCTGGTGATCCTGTTGATGGATTGAAAGCCATTCCATCCTTGGCACGTTGGTTTGT TGTTTCTGGTCGTCAATATATTATTCAAATGAAGGTTTTCTTGGGGGGACCTGATGCGCAAGAAATCTATATTACAGAGAGTGATGACCTTAAGTTGCAC CATGAGCAGTCTGAATACTGGACAATTTTCATGTTATCAGAGGATATTGTGGTCAAACATGGCTGGCGAAATTCCAGAATTCTGAGAGCAATTTCCCTTG GTCAAGGAAAACTAACAGCTTCTTTAACTTATTTTAGTGGGCACCGGGAGAGAAAAAAGGTTCTTAGCGCCGCGCAAGAAATTATGGTATGTGATCAAGT GAAGTTCAGTTTGGATGGAGCAAGCGGTACACATCAGACTATTCTTCTTCCCTGGACTCCTACTATTTACCAGGAGGTGGAGCTAAAGGCAACAGGAGGC TGTGCAAAAACATCCAGTGATTATAAATGGTTTTCTTCAGACACGTCTACTGTGTCAATATCTCCATTTGGGGTACTTCAGGCAAAAAAGCCTGGTAAAG CGACTGTCAGAGTAGTGTCCATTTTTGATTCTTCTAATCATGACGAGGTGGTCATTGAAGTTTCTGTACCATCATCTATGATTATGCTTCAAAACTTCCC TGTAGAGACTGTTGTAAGATCACATCTTCCAGCTGCCGTAACAATGAAAGCATCAGATGGTTCCTATTATTATACATGTGATGCTTTTCATCTATTCGTA AAATGGAAAGTTGGAAGTGAGTCTTTCGTCATTGTCAATGCAACAGAGGAGGCACGTATTGCAGAAAAACTGGGGGCTTTTCACCTCTATGAATCAGTTT ATGGTCCACCATGTTCATGGGCCTATATATATGCTTCCGGTCCTGGGCAGACCATGCTGCAGGCAACATTGTCGAAAGAACATCACTTGGATCAATCGTT TCATGGGTCCATTATTTTGAAGGCATCATCACGTATTGCAGCATACCCACCACTTACAGTGCATCAGGTAGTAGATGGAAGCCAATTTGGTGGGTATTGG CTTGATTTGGGTCATGTTGAAGCAAGCAATCACCTGGAGCCTTTGGAGAGCTTGTATCTTGTCCCTGGAACAAGTTTAGATATCATGCTTCTTGGTGGAC CAGCACCATGGGACAAAGATGTTGACTATCTTGAAACTGTGGAAATATCAGGTGACAAGCATGCTTCCAGTAAAGATGGAATTCATGCACGTCGGATTTC TGGCAGCTATCAGAGTATGTACAGAGTTTCATGCCAAACTCTGGGGATATTTGATTTGGTTTTCAAACGCGGGAATTTGGTTGGAGATGACCACTCTCTG CCTGCAATAGCAGAAGTTGCTTTGTCTCTTACATGCAGCTTTCCATCTTCAATTGCACTTATCGTTGATGAACCCGTTAACAGACATGATGCCATAAGGT TCGCATCTCTTGCTGATCGTAGCACAGGGCAAATCCGCACCACCCCTGTTACTGTGGCAAATGGGCAAACTATTAGGGTGGCTGCAGTTGGCATAGGTGT TTCTGGAGAAGCTTTTGCAAACTCATCTTCTCTTTCTCTGAGGTGGGAGTTGAGCAGCTGTGAAGGACTGGCATATTGGTGGGCTGATGCTTATGAGTCG CAGAGATTGAAATCCAGCTGGGAGAGGTTCTTAGTCTTGCAAAATGAATCAGGAGAATGTATTGTTCGTGCCACTGTTATTGGTCTTGATGATGCCCTCG GTAGTCATTATTTGGCTCAGTTGCGAAGTCTAGAGAATGTTCTTACAGATGCTGTAAAGTTGCAGCTTGTTTCTTCTTTGAGAGTGAATCCAGAGTTCAA CTTGTTGTATTTCAATCCCGATGCTAAGGTAAATCTTTCAATTGCTGGAGGGAGCTGTTTATGGGAAGCTGTTGTGAATGATTCTCAAGTGGTAGAAGTT GCTCAGCCCCCACCAGGCTTACAATGCTTTCAGTTGAGGCTCCTTCCTAAAATGTTGGGGACTGCACTTGTGTCAATATCTGATATTGGGCTTATTCCTC CTACTTCAGCTTCTGCTGTGGTTCAAGTTGCTGATGTGGACTGGATTAAAATAGTATCAGGAGAACAAATAAGTCTCATGGAAGGACAGTCACAGCCCAT ACATTTAATGGCTGGGATTAAGGATGGGAATGCTTTTGACTCTAATCAGTATGCGTACATGAAAATTCATGTACACATCGAGGATCCTATAGTTGAACTT GTTGACAAGAATGGTATGCCTAGTGATGCCGGTGGATATGTTAATGCTCCAAACTTTACGATCAATGCTAAAGATCTTGGATTCACAACACTTTATGTTA GTGTTAGACAGCAATCTGGACATGAAATATTGAGTCAATCAATAAAGATAGAAGTATATGCGCCCCTGAGAATTCATCCAGATGATATTTTCCTGGTACC AGGTGCTTGTTACATGCTTGCTATGAAAGGGGGCCCAACAGTTGGCGTATATATTCAGTATGCTTCAATGGATGATGGAATAGCAACAGTGGACAAATCT TCAGGACGACTTTGTGCAATTTCTCCTGGAAACACTACAATCCTTTCCTCGGTGTTTGGGAATGGAGGTGTTGTGGTATGTCAAGCACATGGTAGCATTT ATGTTGGAGTTCCTTCTTTGTCAATGTTGAGTGCACAAAGCGATAAGCTTGATGTCGGCCGTGAGATGCCGATATATCCATCATTTCCTGAGGGTGATTT ATTTTCATTTTATGAGCTCTGCAGAAGTTACAAGTGGACCATAGAGGATGAAAAGGTGTTGAGTTTCAACATGGCAGAAAGCTCAAATGTTGAAAAGCAC TGGTTCCCATTGGATGATGAGCAGGAACTTGATTTTATTAAAGTCTTGCATGGAAGATCTGCAGGCAAGGCAAATATCACAGTTACATTCTCTTGTGATT TCGTTTCCGCTTCGTTCTCACAGTCGAGGCTATATGATGCTTCTTTATCACTATTGGTTGTGCCTCCTCTCCCTCTTGCTCTTGGAGTTCCAATGACATG GCTTCTTCCTCCTCATTATGTTACATCTAGCCTTTTGCCTTCATCTTTGGAATCGCATGGTCAACAAGATGCTCAGAGTCGTAGAGGAACAATTATCTAT TCGTTATTAAGTTGTGAAAAGAATGAAGTTTGGAAAAAAAATGCAATTTCTATAGATGGAGATAGAATAAAAACAACTGAGAGTAACAATCTTGCATGCA TACAAGCCAAAGATCGAACCACTGGAAGAACTGAGATTGCATCTTGTGTCAAGGTCGCTGAGGTGGCTCAAATAAGAATAATGAATAGGGACCCCCCTTT CCATGTAATTTATCTCGCTGTTGGTGCCAACCTTGATCTTCCAATAAGCTATTTTGATGCTTCAGGGAATCCCTTTTATGAAGCATATGATGTCATTTCC TATCATGCTGAAACCAACTATCATGAAATTGTCTCCGTTGTGCATACAAGAAATGGCAATGGGACTATCCATCTGAAGGCAATGCAAACTGGTAGAGCTC TGGTGCGAGTATCAATGAACAGTAATCCACGAAAATTTGACTATATACTGGTTTCAGTTGGTGCTCACATATATCCCCAAAACCCTGTCCTTCAACATGG GAGTTCTCTTAACCTCAGTGTAATAGGCATTAATGATCAAGTTTCTGGCTGCTGGCATAGCGCTGATGAAAGAGTTGTTTCTGTAGACATGCGATCTGGA AAAATTGAAGCATGTGGAATAGGTTCAACCCATGTATTTTTCAAATGCCCAAGCATGAAATTGCAAACAGAAATCACAGTGCTATCAGGAAATATTGTTT CTATTCATGCCCCAAAAGAGATCCTAACAAACATTCCTTACCCAGCAAAAGGATATAGCTTCCCTTTGAGCTTAAGTGATACTTACAACAAGCTTGAAAC TCTTGGAAACAGTAAGGGAGTATCATATGACTGCAAGGTTGATCCTCCTTTTGTGGGGTATGCAAAGCCATGGATGGATCTTGAATCTGGGAATTCCTAT TGCCTGTTCTTCCCATATTCACCAGAGCACTTGGTGCATTCTGTACCCAGGTTGAAGGACATGAGACCATATGTATCTATTTCTATAAACGTATCACTCA GAGAAGCCAGCCATGTCTCTGGATCTGCATCAGCAATTTTTATTGGAGGGTTTTCAATATTAGAAATGGACAAGAGTCCAATGCAACTGAACCTGACACC AGATTCCAACAAGACTACTATAACCATCTTGGGAAATACAGATGTTGAAATCCACTGGCTTGATCGGGATTCAATGAAGATCGCTCTTGTCCACAAGGAA GATTTCGGGATAGGTAGCCATGCACAATATGAGGTCGAAGTGTTGAGAGCCAAAAGATTGAAAGATAGAATCACCATCACTCTCCCAGCCAATGGTCAGA GAATGGAAATACAAGTTACTTATGAACCTGATGCAAAAACGGGGGCAAAAACTAGCTTTGCAACCTTCATTGGGCTACTAGTAGCTGGATGTGTGATCCT TTGTGTAATTTATCTAGGCTGTTCCTTGCTTATCTCTGAGATATCCAGCATACATGTGCCCTCTACCACCCCTGCCACTCCACCTAGCGCAGCACCACAG ACACCTGCTCGTGGCAGTCCTGTCTTGACTGAACAGTCGCCTCGAACACCTCAGCCATTTGTAGATTATGTAAGGAAGACAATAGATGAAACTCCCTACT ACAAGCGAGAAGTTAGGAGGAGGTCTAATCCACAGAATACTTACTAG
AA sequence Show only first row Show all	>Potri.001G345100.1 pacid=42791539 polypeptide=Potri.001G345100.1.p locus=Potri.001G345100 ID=Potri.001G345100.1.v4.1 annot-version=v4.1 MKVLRFAAFLVAFTTLIVVGKTTSHLSPGPHVTDVNILLPPKMTRPVEYRLQGSDGCFKWSWDHHDILSVIPEYNLSYSHCSTSARLRSIAPFTGRKETA IYAADVHTGIVIRCKVFIDNISRIQIFHNSIKLDLDGLATLRARAFDREDNVFSSLAGLQFMWQLMPETDGLPHHLVHVPLRDSPLSDCGGLCGDLNIQI ELEDSGVFSDLYVVKGVEIGHENVSVHLLEPQFKHLADKIVLTVAEAMSLEPPSPVLVLIGAAFRYTLKVIRGNILQVVALPSPHHRWSVLNSSVAEVDH LSGFAQALSLGVTSVIVKDTRVAGHMQVSSLNVVLPDTLCLFIMPLPVSGDPVDGLKAIPSLARWFVVSGRQYIIQMKVFLGGPDAQEIYITESDDLKLH HEQSEYWTIFMLSEDIVVKHGWRNSRILRAISLGQGKLTASLTYFSGHRERKKVLSAAQEIMVCDQVKFSLDGASGTHQTILLPWTPTIYQEVELKATGG CAKTSSDYKWFSSDTSTVSISPFGVLQAKKPGKATVRVVSIFDSSNHDEVVIEVSVPSSMIMLQNFPVETVVRSHLPAAVTMKASDGSYYYTCDAFHLFV KWKVGSESFVIVNATEEARIAEKLGAFHLYESVYGPPCSWAYIYASGPGQTMLQATLSKEHHLDQSFHGSIILKASSRIAAYPPLTVHQVVDGSQFGGYW LDLGHVEASNHLEPLESLYLVPGTSLDIMLLGGPAPWDKDVDYLETVEISGDKHASSKDGIHARRISGSYQSMYRVSCQTLGIFDLVFKRGNLVGDDHSL PAIAEVALSLTCSFPSSIALIVDEPVNRHDAIRFASLADRSTGQIRTTPVTVANGQTIRVAAVGIGVSGEAFANSSSLSLRWELSSCEGLAYWWADAYES QRLKSSWERFLVLQNESGECIVRATVIGLDDALGSHYLAQLRSLENVLTDAVKLQLVSSLRVNPEFNLLYFNPDAKVNLSIAGGSCLWEAVVNDSQVVEV AQPPPGLQCFQLRLLPKMLGTALVSISDIGLIPPTSASAVVQVADVDWIKIVSGEQISLMEGQSQPIHLMAGIKDGNAFDSNQYAYMKIHVHIEDPIVEL VDKNGMPSDAGGYVNAPNFTINAKDLGFTTLYVSVRQQSGHEILSQSIKIEVYAPLRIHPDDIFLVPGACYMLAMKGGPTVGVYIQYASMDDGIATVDKS SGRLCAISPGNTTILSSVFGNGGVVVCQAHGSIYVGVPSLSMLSAQSDKLDVGREMPIYPSFPEGDLFSFYELCRSYKWTIEDEKVLSFNMAESSNVEKH WFPLDDEQELDFIKVLHGRSAGKANITVTFSCDFVSASFSQSRLYDASLSLLVVPPLPLALGVPMTWLLPPHYVTSSLLPSSLESHGQQDAQSRRGTIIY SLLSCEKNEVWKKNAISIDGDRIKTTESNNLACIQAKDRTTGRTEIASCVKVAEVAQIRIMNRDPPFHVIYLAVGANLDLPISYFDASGNPFYEAYDVIS YHAETNYHEIVSVVHTRNGNGTIHLKAMQTGRALVRVSMNSNPRKFDYILVSVGAHIYPQNPVLQHGSSLNLSVIGINDQVSGCWHSADERVVSVDMRSG KIEACGIGSTHVFFKCPSMKLQTEITVLSGNIVSIHAPKEILTNIPYPAKGYSFPLSLSDTYNKLETLGNSKGVSYDCKVDPPFVGYAKPWMDLESGNSY CLFFPYSPEHLVHSVPRLKDMRPYVSISINVSLREASHVSGSASAIFIGGFSILEMDKSPMQLNLTPDSNKTTITILGNTDVEIHWLDRDSMKIALVHKE DFGIGSHAQYEVEVLRAKRLKDRITITLPANGQRMEIQVTYEPDAKTGAKTSFATFIGLLVAGCVILCVIYLGCSLLISEISSIHVPSTTPATPPSAAPQ TPARGSPVLTEQSPRTPQPFVDYVRKTIDETPYYKREVRRRSNPQNTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	0	1
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	1.41	0.8611
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	2.00	0.8652
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	4.58	0.8424
AT3G14120			unknown protein		Potri.001G165900 [exp]	5.09	0.8099
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	5.19	0.8208
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	6.00	0.8314	Pt-CIP111.1
AT4G20020			unknown protein		Potri.004G218650 [exp]	6.00	0.8386
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.007G033000 [exp]	6.92	0.7803
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Potri.010G098400 [exp]	8.36	0.8195
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G034300 [exp]	8.60	0.7605

Compare expression of checked genes

Potri.001G345100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.