Plant FIBer expression Database

Potri.001G345200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19130 790 / 0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032125
[exp]
930 / 0 AT5G19130 793 / 0.0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
Lus10014561
[exp]
917 / 0 AT5G19130 785 / 0.0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04114 Gaa1 Gaa1-like, GPI transamidase component
Representative CDS sequence
>Potri.001G345200.1 pacid=42790306 polypeptide=Potri.001G345200.1.p locus=Potri.001G345200 ID=Potri.001G345200.1.v4.1 annot-version=v4.1
ATGCCAAAGACAGAGACGGATACACCTAAAATGAAGCCGAGACCAATCGTGCGTCTAGGCATCTTCCTCATCTCTCACAGCCTCCTGGTTAGTGTTGTCT
GTTGTACGGCTGGGGTTTTAGCTCTCTTGCTGCTTCCACTTCTCGCCAAGAGCACTTACATTTCTGAAAATGCTCTCATGCCAGGTTCTGCAAGCAGTAT
GATCTCTAATCGTGACATTTCAGAGGCAAATAGGTTGGCAAGTGATTTGAGTGGTTTGAATTTTGAACCTCAAGATGCTGCCGCCTTGGAAAGTCGAGGG
ATCCTTACGAAATACATGTCTGACTTGGGTGCTGAAGTTAGTTATCACAAGTTCCACCATAAGCCAAATCAGTTTCATCCGCTGCATTTCTTCTCCAGTC
CTGATTCTACAAGTTCAGTAAAGAATTTTAGTTGTTCGGCACACGGTGTCAATACTGTTGGAATAATTAGAGCTCCTCGCGGTGATGGTAAGGAAGCTAT
TGTCTTGGTGACACCTTACAAGTTTGGAAAGAGTGGTGCGGCAGAAACTTTATCCTTGAGCATTGCATATACAGTATTTTCCTTGCTCTCTCGAGTTACA
TGGCTGGCCAAGGACATTATATGGTTCGTTGCTGACTCACAGTATGGAGAATATGCCCCCGTTGAAGCTTGGCTAAGAGATTATCACACGCCTGTATTTA
CTGGTTTGGGCACCCTAAATGCTGATACATGCGTCAAAATTGATGATCTCTATGTATTTGAACAGAAATCTATTGCGCAAAGAAAGATATCTGATGGTTT
TAGACGTGCCGGGACTATGGCTGCTGCACTGATATTAAAGGTTGCAGATAGAAACGAACTGTTGGAGGACACTCTTAATATCTATGCTGAGGCGTCCAAT
GGGCAGATGCCAAACCTGGATCTCATCAATATTGTGAATTATTTAGCTGTACATAGGCAAGGATTGCGTGTAAAGGTTGAGAAAGTTTTGACTCTACTTG
ATTTGAGATGGCTTGAGATTTTGGGAGAAATGTTTGAGTTACTAGGAAAAGTCGCCAGAAGCTTAAATCCTGGATGGAAATTTGGTATTTCAGCTGCAGA
TTATATTGAAGGCAGTGCTACACTTGCAAGTTCATTGTATTACCAGGCTTTGGGCATTCCCACAGGTCCTCATGGTGCTTTCCGTGATTTCCAAGTTGAT
GCAATTACTTTGGAGATTTCACCTAAGGTTTTTCCTCATAACAAAGCCAGGCACAATGAGTTTCTTCTAAGAGGAGGCCGGTTGGTTGAAGGAGTTATAA
GATCAATAAATAATCTCCTCGAGAAGTTTCACCAGTCATTTTTCCTATACATGTTAACATCTCCCAGCAAGTTTGTGTCAGTCGGAGTGTACATGATTGC
TTTTGCACTCCTTGTAGCACCACTTCCCCTGGTAGCAGCTTCACTTTATGCTGATGCTAATCAACTGGATCTTGGTGTCAAAAATACCAAATCTACTCCT
ACAGCCACTGCTTCTGACGAGCTTGACATCACTTTCAGATCATGGAAATGGCTGTATGCTGCAAAAGAAGTTTTTCTCATTCATGTATGGGGTGCAGCTG
TTTCATTGCTTCCATATTTCATTTGTCAGATACCAAACTGCAGCCCAACGTCCAGCTCTGTTATCTGGGTTTTCCTTTCAATGCTTAGCCTCCTAATCTT
GTACTTGATAGTGGGTTCTCCATCTACTCACGTCTCTATATCTCAACCTGAGGAGAAGGGCGAATGGGCTATTTTGAAATCAGCGACCATCTCAGCAGTC
TTCATTGGTTTGCTTGTCATGTCAGTTGTTAATTTTGCAGCAGCAGAAATTGGTGCGTTACTTTTGGTCCCAATGTGTTTGATGGCTCAACCTTTGAAGC
TTGACATGAAAGCTGGGAAGTTAAGGAGTTTCTTGAGGATTATTTGTAATGTGGTTTTGGGTTTTGTTGCATTTCCGCCAGCTGCTTTTTTTGTGGTGAA
GACTATATTCGAAGGTTTTGACAGCATTAATATGGGTGACTTCTGGAATTGGATGGAGTCCCTTTGGGCATGGAACAGTGCTACTTACATTTATATAGGT
ATGGTCCATCTGCCATGTTGGGTGTTGTGCTTACACATTTTACTTCATTCTTGTTGA
AA sequence
>Potri.001G345200.1 pacid=42790306 polypeptide=Potri.001G345200.1.p locus=Potri.001G345200 ID=Potri.001G345200.1.v4.1 annot-version=v4.1
MPKTETDTPKMKPRPIVRLGIFLISHSLLVSVVCCTAGVLALLLLPLLAKSTYISENALMPGSASSMISNRDISEANRLASDLSGLNFEPQDAAALESRG
ILTKYMSDLGAEVSYHKFHHKPNQFHPLHFFSSPDSTSSVKNFSCSAHGVNTVGIIRAPRGDGKEAIVLVTPYKFGKSGAAETLSLSIAYTVFSLLSRVT
WLAKDIIWFVADSQYGEYAPVEAWLRDYHTPVFTGLGTLNADTCVKIDDLYVFEQKSIAQRKISDGFRRAGTMAAALILKVADRNELLEDTLNIYAEASN
GQMPNLDLINIVNYLAVHRQGLRVKVEKVLTLLDLRWLEILGEMFELLGKVARSLNPGWKFGISAADYIEGSATLASSLYYQALGIPTGPHGAFRDFQVD
AITLEISPKVFPHNKARHNEFLLRGGRLVEGVIRSINNLLEKFHQSFFLYMLTSPSKFVSVGVYMIAFALLVAPLPLVAASLYADANQLDLGVKNTKSTP
TATASDELDITFRSWKWLYAAKEVFLIHVWGAAVSLLPYFICQIPNCSPTSSSVIWVFLSMLSLLILYLIVGSPSTHVSISQPEEKGEWAILKSATISAV
FIGLLVMSVVNFAAAEIGALLLVPMCLMAQPLKLDMKAGKLRSFLRIICNVVLGFVAFPPAAFFVVKTIFEGFDSINMGDFWNWMESLWAWNSATYIYIG
MVHLPCWVLCLHILLHSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G19130 GPI transamidase component fam... Potri.001G345200
[exp]
0 1
AT4G00090 Transducin/WD40 repeat-like su... Potri.014G069400
[exp]
2.23 0.7892
AT5G27540 MIRO1, EMB2473 embryo defective 2473, MIRO-re... Potri.013G023100
[exp]
10.39 0.7218
AT1G11900 Tetratricopeptide repeat (TPR)... Potri.009G067400
[exp]
12.84 0.7407
AT3G10200 S-adenosyl-L-methionine-depend... Potri.006G043600
[exp]
19.33 0.6933
AT5G66960 Prolyl oligopeptidase family p... Potri.007G035900
[exp]
19.49 0.7430
AT5G64600 O-fucosyltransferase family pr... Potri.005G059600
[exp]
22.89 0.7758
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.017G106500
[exp]
28.53 0.7226
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Potri.003G173900
[exp]
32.07 0.7038
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Potri.005G226100
[exp]
34.78 0.7033
AT4G21300 Tetratricopeptide repeat (TPR)... Potri.011G156800
[exp]
40.59 0.7085

Potri.001G345200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.