Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27640 525 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 88 / 3e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 77 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 76 / 6e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 69 / 4e-12 transducin family protein / WD-40 repeat family protein (.1.2) AT5G64730 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 68 / 8e-12 transducin family protein / WD-40 repeat family protein (.1) AT4G29830 64 / 5e-11 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 65 / 9e-11 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G53500 64 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172800 [exp] 86 / 2e-17 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 82 / 2e-16 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 81 / 2e-16 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 77 / 2e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 77 / 1e-14 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 67 / 1e-11 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 66 / 1e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 66 / 4e-11 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.001G306500 [exp] 64 / 5e-11 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032126 [exp] 602 / 0 AT3G27640 584 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014560 [exp] 599 / 0 AT3G27640 578 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 84 / 8e-17 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 83 / 1e-16 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042076 [exp] 81 / 7e-16 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 77 / 3e-15 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 76 / 6e-15 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 77 / 2e-14 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 72 / 2e-13 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 70 / 9e-13 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G345400.1 pacid=42789454 polypeptide=Potri.001G345400.1.p locus=Potri.001G345400 ID=Potri.001G345400.1.v4.1 annot-version=v4.1 ATGGAGAGGTCTAGCAGATCTAAATCACTGTTTCGAGACATGAGGTCAAGAGAGCTGGGTGGTTTTAGAAAACGGCGCTTTATTACCCAAATGGGATCCG ATTTCACTGAAATGGGATCGGTGACGGTCGAACATAACGGCGAGGAAACGCCACCACTGTCTGTCTCTTTTTGCAAGACAAGTAAATATTCACATATTTT GGCGGTGTCGGACGAGGATGGCTATGTGAGCATGTTTGATACTCGTACCGAATTCCCTTCTGAGAAAGCAAGAATCAGTGACTGGGTAGCTCACCAGAAC GCCATCTTTGATGTTTGTTGGATTAAGGAAGATACCAACATACTCACAGCTTCAGGCGATCAAACTATAAAGGTATGGGATGCACAAGAGAAGAAATGTA CTGGAATATTGATGGGGCACACAGGAAGTGTTAAATCTCTGTCTCCCCATCCAACAAATTCGGATCTTCTTATCTCGGCTTCCAGAGACGGGTCATTTGC TATCTGGGATTTGAGATGCAAGACAACTTCCAAAACTAGATGCAGTGAAGCACATGTCGCTCCAGCTGCCATGGTCCAAGGAGCTCATCTTTCTTCTCGA GCAAAGCGGGTCAGGCGTGGCAAGGCTGCTTCGATGAGCATTACATCAGTTCTTTATCTTAAAGACGAGGTATCCATTGCCACTGCTGGAGCAGCAGACA GCATTGTTAAATTCTGGGATACTAGAAATCTAAAGGTTCAGGTCACTCAGGCATCCCCTAATATCAAGTCATCAACTGAGAAGGAAAGAAGATTACATGG CATATCTAGTCTGTCCCAGGATTTAAATGGCGTGTTTCTTACAGCTACATGCATGGACAATAGAATATACTTGTATAATGTACTTCAGCTTGATAAGGGT CCGATGCGGTCATTTTCTGGATGTCGGATAGAATCATTCTATGTAAAGTCAACAATCAGTCCTGACGCAGCTCACATACTCAGTGGCTCTAGTGATGGAA ACGCCTACATATGGCAGGTGAACAAGCCCGATGTGGATCCCATCACATTGAAAACTCATGATGGAGAGGTTACAGCAGTAGATTGGTGTCCATCTGAGGT TGGGAAGATAGCAACTTCTTCAGATGATTTTACAGTTCGCATCTGGAACATTAATAGCAGTTATTGTTCAAGCACAACAAGATCTCCATCTGCCATTCGA AGGAGGGTAATGGCAATCCCAAGAGAGGAATGTAGAGAACTTTTGATGAATGATGAACGAATTGATCCAACAAAGGTTCCTGACAATCTGCTTCCTTCTG ATGAAGTGTTCAACCAAAATAACCCACCTATTCCTATAACAATGCCCACAATTAGTACCCCTGAAGCCCATAAGAAAAAGTTTTCACTAGATTCTGATTC TAAAGAAACTTTTGAGAAAACCCCTGAAGCAGCGATGAAGAGCCCCTCTTCTGTATTGAACCCTCCTTCTTCTTTAAAAAGAACTATCAGAGATTACTTT CTAGCAGCTTAA
AA sequence Show only first row Show all	>Potri.001G345400.1 pacid=42789454 polypeptide=Potri.001G345400.1.p locus=Potri.001G345400 ID=Potri.001G345400.1.v4.1 annot-version=v4.1 MERSSRSKSLFRDMRSRELGGFRKRRFITQMGSDFTEMGSVTVEHNGEETPPLSVSFCKTSKYSHILAVSDEDGYVSMFDTRTEFPSEKARISDWVAHQN AIFDVCWIKEDTNILTASGDQTIKVWDAQEKKCTGILMGHTGSVKSLSPHPTNSDLLISASRDGSFAIWDLRCKTTSKTRCSEAHVAPAAMVQGAHLSSR AKRVRRGKAASMSITSVLYLKDEVSIATAGAADSIVKFWDTRNLKVQVTQASPNIKSSTEKERRLHGISSLSQDLNGVFLTATCMDNRIYLYNVLQLDKG PMRSFSGCRIESFYVKSTISPDAAHILSGSSDGNAYIWQVNKPDVDPITLKTHDGEVTAVDWCPSEVGKIATSSDDFTVRIWNINSSYCSSTTRSPSAIR RRVMAIPREECRELLMNDERIDPTKVPDNLLPSDEVFNQNNPPIPITMPTISTPEAHKKKFSLDSDSKETFEKTPEAAMKSPSSVLNPPSSLKRTIRDYF LAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27640			Transducin/WD40 repeat-like su...		Potri.001G345400 [exp]	0	1
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.008G055700 [exp]	3.46	0.8497
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.008G215300 [exp]	4.47	0.8167
AT4G39520			GTP-binding protein-related (....		Potri.007G080900 [exp]	7.87	0.8065
AT5G27620		CYCH;1	cyclin H;1 (.1)		Potri.005G027700 [exp]	14.89	0.7586
					Potri.001G174000 [exp]	16.37	0.8597
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.013G021900 [exp]	19.87	0.8557
					Potri.005G026450 [exp]	21.44	0.8423
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.010G193200 [exp]	22.18	0.7169
AT1G58070			unknown protein		Potri.003G009400 [exp]	22.97	0.8396
					Potri.001G178600 [exp]	23.87	0.8223

Compare expression of checked genes

Potri.001G345400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.