Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40440 852 / 0 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT5G56580 239 / 3e-74 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G29810 228 / 4e-70 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 211 / 9e-64 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT3G21220 157 / 3e-43 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 155 / 2e-42 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G73500 153 / 2e-42 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 150 / 4e-41 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G53570 139 / 6e-35 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G54960 130 / 5e-32 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050800 [exp] 234 / 3e-72 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 234 / 3e-72 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 231 / 2e-71 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.015G030700 [exp] 158 / 5e-44 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G249300 [exp] 153 / 8e-42 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 152 / 3e-41 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 148 / 3e-40 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.005G062500 [exp] 142 / 4e-36 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.008G183700 [exp] 135 / 2e-35 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022265 [exp] 915 / 0 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10001137 [exp] 756 / 0 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10012938 [exp] 228 / 6e-70 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10027623 [exp] 222 / 4e-67 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 224 / 7e-67 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10034986 [exp] 214 / 1e-64 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10035764 [exp] 149 / 4e-40 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10001081 [exp] 140 / 2e-38 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10002096 [exp] 142 / 2e-35 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 131 / 2e-32 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G345500.1 pacid=42791215 polypeptide=Potri.001G345500.1.p locus=Potri.001G345500 ID=Potri.001G345500.1.v4.1 annot-version=v4.1 ATGGCTGGGTTGGAGGAGCTAAAAAAGAAGCTTACACCATTGTTTGATTCTGAAAAAGGCTTCTCATCCGATTCAACCTTGGACCCTAGTGATTCTTATG TGCTTTCAGATGGCGGAACCGTAAACTTACTAAGCAGATCATACGGAGTGTACAACATAAATGAGCTGGGATTGCAAAAATGCACTACTTCACCTGAAGA TGAAACTGACCATAGCGAAAAGACATATCGATGTGCCTCTCATGAAATGAGGATTTTTGGAGCAATAGGCAGTGGTGCTAGCAGTGTTGTTCAGAGAGCT CTCCATATTCCTATGCACAGAATTCTTGCCTTGAAGAAAATTAATATTTTTGAAAAGGAGAAAAGACAACAGCTTCTTACTGAAATACGGACGCTTTGCG AGGCACCTTGTTATGAAGGTCTTGTGGAATTCCATGGAGCATTTTATACTCCTGATTCTGGGCAAATAAGCATAGCTTTAGAATACATGGATGGAGGATC GCTGGCTGATATTTTACGATTGCGGAAAAGAATACCAGAACCAGTGCTTTCACATATGTTTCAAAAGCTTCTAATTGGACTAAGCTACTTGCATGGGGTT AGGCACTTAGTTCACAGAGATATCAAACCAGCAAATCTGCTCGTGAATCTCAAAGGGGAACCAAAAATAACAGATTTTGGGATAAGTGCTGGCCTAGAAA ATTCTGTGGCAATGTGTGCTACTTTTGTTGGAACTGTAACATACATGTCACCTGAGCGGATTCGGAATGATAGCTATTCTTATCCAGCTGATATTTGGAG CCTAGGTCTTGCTCTCTTTGAGTGCGGAACAGGGGAATTCCCGTACACAGCTAATGAAGGACTTGTCAATCTTATGTTGCAGATCTTGGAAGACCCTTCA CCATCACCATCGAAAAACAATTTTTCTCCAGAGTTCTGCTCATTTATTGATGCTTGCCTGCAGAAGGATCCAGATACTAGACCAACAGCAGAGCAGCTTC TTTCATACCCATTTATTACAAAGTATGCTCACACTGATGTTGACCTAGCAGCATTTGTCCAGAGCGTGTTTGATCCAACTCAGAGGATGAAGGATTTGGC TGATATGCTGACAATACACTATTACTTACTTTTTGATGGGCCTGAAGAACTTTGGCAGCACACAAAGGCCTTCTATAATGAAGGCTCGATATTTAGTTTC TCCGGGAAACAATCTGTCGGTTCAAATGATATTTTTGCAACCTTGACCAACATACGGAGTACATTAGCGGGTGACTGGCCTCCTGAAAGACTTGTTCATG TTGTGGAAAAATTACAGTGCCGTGCTCATGGTGAAGATGCAGTTGCAATCCGCGTTTCAGGATCCTTTGTAATTGGAAATCAGTTTCTCATATGCGGAGA TGGTGTGCAATGCGAGGGACTGCCAAATTTTAAGGATCTCTCTATCGACATCCCTAGCAAGCGAATGGGTACATTTAAGGAACAGTTTATCATGGAGCCT GGAAATGTGATCGGGCGTTACTTCATAGCTAAACAAGAGCTTTATATATTTCAGGAGAATAACTGA
AA sequence Show only first row Show all	>Potri.001G345500.1 pacid=42791215 polypeptide=Potri.001G345500.1.p locus=Potri.001G345500 ID=Potri.001G345500.1.v4.1 annot-version=v4.1 MAGLEELKKKLTPLFDSEKGFSSDSTLDPSDSYVLSDGGTVNLLSRSYGVYNINELGLQKCTTSPEDETDHSEKTYRCASHEMRIFGAIGSGASSVVQRA LHIPMHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRLRKRIPEPVLSHMFQKLLIGLSYLHGV RHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNDSYSYPADIWSLGLALFECGTGEFPYTANEGLVNLMLQILEDPS PSPSKNNFSPEFCSFIDACLQKDPDTRPTAEQLLSYPFITKYAHTDVDLAAFVQSVFDPTQRMKDLADMLTIHYYLLFDGPEELWQHTKAFYNEGSIFSF SGKQSVGSNDIFATLTNIRSTLAGDWPPERLVHVVEKLQCRAHGEDAVAIRVSGSFVIGNQFLICGDGVQCEGLPNFKDLSIDIPSKRMGTFKEQFIMEP GNVIGRYFIAKQELYIFQENN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40440		ATMKK3	mitogen-activated protein kina...		Potri.001G345500 [exp]	0	1
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G132900 [exp]	16.06	0.6823
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	18.49	0.7013
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Potri.010G167300 [exp]	21.84	0.6717
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	24.79	0.6903
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069300 [exp]	35.32	0.6728
AT1G43580			Sphingomyelin synthetase famil...		Potri.002G066900 [exp]	37.01	0.6883
AT5G56520			unknown protein		Potri.001G003500 [exp]	38.34	0.6708
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	52.44	0.6267
AT3G58650			unknown protein		Potri.010G140900 [exp]	55.89	0.6675
AT5G61750			RmlC-like cupins superfamily p...		Potri.015G109600 [exp]	61.48	0.6435

Compare expression of checked genes

Potri.001G345500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.