Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14530 556 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G66240 320 / 2e-108 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT4G02730 78 / 6e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 73 / 3e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 71 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 60 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 59 / 2e-09 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G23430 58 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G27640 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 57 / 1e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071900 [exp] 667 / 0 AT5G14530 558 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G114600 [exp] 328 / 7e-112 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.002G051900 [exp] 85 / 2e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 81 / 5e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 71 / 2e-13 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 71 / 2e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 58 / 5e-09 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 57 / 8e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 56 / 2e-08 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014558 [exp] 627 / 0 AT5G14530 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021575 [exp] 334 / 5e-114 AT5G66240 540 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10017157 [exp] 335 / 1e-112 AT5G66240 541 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10032128 [exp] 291 / 2e-98 AT5G14530 260 / 8e-87 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 84 / 3e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 83 / 8e-18 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 72 / 5e-14 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 62 / 9e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 62 / 3e-10 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018081 [exp] 60 / 2e-09 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G345900.2 pacid=42791271 polypeptide=Potri.001G345900.2.p locus=Potri.001G345900 ID=Potri.001G345900.2.v4.1 annot-version=v4.1 ATGGCTATGACGTCGCTTACAGAACTCGATGATGATACGGTGCGCAGCATGTCTGTTGGAGCTGTTTTCTCCGAATTTGGGGGGAAGATTAATTCAATTG ATTTTCATCGAAAAGACGATTTGTTAGTTACAGCTAGCGAGGATGATTCGGTTCGCCTTTACGACATTGCAAGTGCCAAATTGCTGAAGACTACGTTTCA CAAGAAACACGGTGCAGATCGAATATGTTTCACGCACCACCCTAGCTCTGTTATTTGTTCCTCAACATACAATTTAGATTCTACCGGAGAATCATTACGT TATCTATCAATGTATGATAATCGATGTCTTCGCTACTTCAAAGGGCATAAAGAGAGGGTTGTTTCCCTCTGCATGTCTCCAATCAATGATAGCTTCATGT CTGGTTCTCTTGATCACAGCGTTAGAATATGGGATCTTCGTGTAAATGCCTGCCAGGGAATTTTGCGTTTACGTGGTAGACCCACAGTTGCATATGACCA ACAAGGTCTTGTCTTTGCTGTGGCAATGGAAGGGGGTGCTATTAAGCTGTTTGATTCACGTTCCTATGACAAGGGTCCCTTTGACACCTTTTTAGTTGGT GGAGATACAGCTGAGGTCTGTGATATTAAATTCAGCAATGATGGCAAATCAATGCTATTGACGACCACAAGTAACAACATCTATGTTCTCGATGCATATG GTGGAGAGAAGCGATGTGGGTTCAGTTTGGAACCATCTCCAAATACAAAAATAGAGGCAACTTTTACCCCAGATGGCCAATATGTGGTATCAGGCTCAGG AGATGGAACCTTGCATGCCTGGAACATCAACATGCGAAATGAGGTATCATGCTGGAACAGTCACATAGGTATCGCATCATGCTTGAAATGGGCTCCTCGT CGTGCCATGTTTGTTGCTGCGTCTACTGTTCTCACGTTTTGGATACCGGACAGCTCAAAATCAACTGTCGAACCTCGTCCCATGGACGTTGAAGGTGCAG CAGCTCCATCTGAAAATGTATCTCAACAATGA
AA sequence Show only first row Show all	>Potri.001G345900.2 pacid=42791271 polypeptide=Potri.001G345900.2.p locus=Potri.001G345900 ID=Potri.001G345900.2.v4.1 annot-version=v4.1 MAMTSLTELDDDTVRSMSVGAVFSEFGGKINSIDFHRKDDLLVTASEDDSVRLYDIASAKLLKTTFHKKHGADRICFTHHPSSVICSSTYNLDSTGESLR YLSMYDNRCLRYFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVG GDTAEVCDIKFSNDGKSMLLTTTSNNIYVLDAYGGEKRCGFSLEPSPNTKIEATFTPDGQYVVSGSGDGTLHAWNINMRNEVSCWNSHIGIASCLKWAPR RAMFVAASTVLTFWIPDSSKSTVEPRPMDVEGAAAPSENVSQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14530			Transducin/WD40 repeat-like su...		Potri.001G345900 [exp]	0	1
AT3G45020			Ribosomal L18p/L5e family prot...		Potri.004G214400 [exp]	12.00	0.7639
					Potri.013G032950 [exp]	17.54	0.7158
					Potri.008G206733 [exp]	23.74	0.7529
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G189400 [exp]	27.38	0.6867
AT3G28370			unknown protein		Potri.017G074100 [exp]	28.67	0.7330
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	36.00	0.7035
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.002G177600 [exp]	43.12	0.6450	Pt-GIF2.1
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	44.54	0.6985
AT4G31860			Protein phosphatase 2C family ...		Potri.003G183800 [exp]	48.64	0.6631
AT1G59740			Major facilitator superfamily ...		Potri.001G272900 [exp]	50.10	0.7243

Compare expression of checked genes

Potri.001G345900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.