Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27670 1757 / 0 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022263 [exp] 1656 / 0 AT3G27670 1258 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010376 [exp] 921 / 0 AT3G27670 687 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013076 [exp] 766 / 0 AT3G27670 557 / 3e-179 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010375 [exp] 333 / 1e-100 AT3G27670 332 / 6e-101 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013075 [exp] 322 / 1e-99 AT3G27670 229 / 3e-68 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010374 [exp] 290 / 9e-88 AT3G27670 183 / 2e-51 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013074 [exp] 224 / 2e-63 AT3G27670 226 / 6e-65 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12530 [poplar] [flax] DUF3730 Protein of unknown function (DUF3730)
Representative CDS sequence Show only first row Show all	>Potri.001G346000.1 pacid=42789513 polypeptide=Potri.001G346000.1.p locus=Potri.001G346000 ID=Potri.001G346000.1.v4.1 annot-version=v4.1 ATGGACTCTTACACTCCTTTACTCCAGAAAACACGGGTTCCACAACCCTCGCTCCAAAAATTCGCGGTGATTTCAATCTTCTCGAAGCTACGATCCGCGC CGAGTTACCTCGACCCGGATTCCGAACCCGGTAGAGAAGCTATCTCTCAATGCCTCCGCTCCGCTTCTCCATCCGTCGTCGACCAGTCTGTACGCGAGCT CTGTCGCCTCCTATTGGACTCCAGATTGGACCTCTCCCGAACTTTGCTGGAGCTCCAGTCTGCACTCGAAGGGTCCGACCCAAAATTTGTTGGTTTATTT GTTAAAGCTCTTGGATTTGTCGTTCGGGTCGGGTTTCAAAGGAATCATGGGTCGTGGCGTTTTTCTTCTATTGAGAATCACCCCTTTGTTATGATTTTGT CATCAAGAACTGAGGTTCAGTCTGAATTGGTTCAGCAAGTCTTACTATTTTTCGGACAGAATAGAAGATCGGGAATGGTGGAAATTTGTGAATTCTTGAG ACCCTTTTTGAATTTTTCGATTCTACGCGTGCCCTTTTCGAATTCTTCGTCATCTTTGTTTGCAAGGCAGTTGATATCATCAATGGCTTCGTTTTGTTGT TCTTTCCCTGATGAGGCGATTCCGGTTTTAAAGCTACTGATAGGTTGCCTTAAGCATGCGTCACATAAGAATTCAGATGAGCTTAAGAACTCATATTATT TTCTGGAATCCATAGTTGATGCATATACGGTCGTTTTGAGACACTTGGTTGGAACCGGACTGCTGGTTACTGAGGCTCAACTGTTTGGTGTGGAACTGTC AGATGCTATTCTTTCATTATTGACATGTCATCACCGGCATGCTGGTAGTAGTGAACCAATTGTTGAACTAGTGAAGCGGCTGTTTGTTGCCCAGAAAAAT CTTTCTTTGCAATATATGCCTGAAATATCATCAACACTGCTATCCTTATTTGTTGTCCTGATTCAATCTGATCTTGAATACGAACAACTCTCTTTATTGA AACTCCTGAACTTCCTTTTAAAATGGAAAAGTGAAAAGGAATATGAGGTTGATAGAGTCAAATGTGCTACGAGCGAAGAGCTTTTGTTCACATTTCCTGT CATCAACCTATTATCATCTACATCTAGATCTATTAAAGGAGAAGCAGCAGAATTGCTTGTGACGCTGGAAAAGGTCCTAGTAGAACTGTCAAAAGCACCA AAGGCTGGACTAGCCAAAGAAGGGGGATTCCCCCCTATCAGCTCTCTAGGATCGATTGCTTATAGGCTTTTGCGATGCTTGTGGTTTCAGGACCAGTTTT TACTGCCCACTTCCTTCCTGAATTTTGCTTCCAGTGGCAAAACGGATGTCAAAGTAATGCACCAGAAACCAAGACATTGGGCTTCTCAGTTAAGAGAATA CATTTTGTCGATTGTAGACAGAAGAAAATCCTCCCTATCTGTTTCTCAGTCTCAAGAACGTTTCACAAGGGAACTGCCCCCTTTACTCGGTGCCATTACT GGTGTTTTGGTGATGCACCGGTCATTTGGAGATACGGCAATTGATTTGCTGGGTGCTATTGGCATTGTGGACCCCAAACAGGGAGTGCCACTGCTGCTAG CAATTCTATTTTATAGTAACATCTTCACCAGTAAAGACATTAGTTACCAGAATATGTTGCCAAAACTTCTGGCATTACTTCCATCACTTGCTTCACATTC TGTGATGATTCCCCTCATAATTCAGACAATCTTGCCGATGCTTCAGAAAGATGGAAAACCTGTGTTGTATGCCACCGGCGCTCGTTTGCTTTGTCAGACC TGGGCAATCAATGACCGTGCCTTTGGGAGTTTGCAAGCAATATTGCTTCCGAAGGGGCTCACTGAATTCAAGCATGAGAGAAACATCTTAATAAGTTTGG CTGCCTCCATTCGGGACATTTGCAGAAAGAACCCTGATAGGGGGGTGGATCTTATCTTATCTGTTTCGGCTTGCATTGAGAGCCAAGATCATATTATTAA AGCTCTTGGATTTCAGAGCCTTGCACATCTATGTGAAGCTGATGTAATTGATTTTTATACTGCCTGGGATGTCATTGGTAAGCATGCGGTAGACTACACC ACAGACCCGGCTCTTGCACAAAGCATATGCCTCCTTCTGAGATGGGGTGCAATGGATGCTGAAGCATATTCAGAAGCTTCAAGGAATGTCTTGCAAATTT TATGGGGTATTGGAACTGCTGTACATGTCAGTCATGCACTTGAGTGGGCAAGGGCAAGGATCTTTGCCTTTGAGGCCCTGAGCCAATATGAGGTTACACA TATACAAATAGGAATTCCAGATTTTAAGACAGTGAACACGGATTTGCTTTTACGTGAGACGAATCTTGATGTGCTCACGGCTATGGAAGGATTTCAAGTC AAGATCATAACTCATGAACATGTGAATCGTCGAAGGTTGGTGAAGGAGAAAAAAATTGCTGGAAGTAAGATTGAGAAGTTGCTAAATGTATTTCCACAGG TTCTCGTCTCAGGGATAAAAGGTAGTGCTGGGCAATTACCTGGGGCAGCTCTGTTATGCCTTTCCTTTACCCCTAAAGATGTGAACAGCCAATGCTTGTC AAGAGTATCTGTAGATTTCCATGCTGGATATGAGAGTGCACTGGTGGAAATAGCTGCTTCTCTTCAATTATCAAGAAATATTTTCACTGCCCTTCTTTCA TTGCAATCTTGGAAGTCCTTCATGCGGCGTTGGATAAGGGCAAATATTTCATCCCTTGATGCTAAAGCACCATCTGTTTCATTAGATAAAACTTCTAAAG CTGCTACCGATATCCTGAAGCGTGTGATGCGACTTGCTGAAGAGTCTATCCCAAGTTCTGCTGAAAATATTGCTCTGGCTATTGGTGCACTCTGTGTGGT GTTGGCTCCATCTACCCATACTGTCAAATCAACTGCTTCAAAGTTTCTGCTAAACTGGTTGTTCCAGAATGAGCATGATCATCGCCAATGGTCAGCCGCA ATATCTCTTGGATTGGTTTCAAGTTGTCTTCATGTAACTGATCACAAACAGAAATTTGAGAATATCACTGGACTTATAAAGGTTTTGCATGGCAGCAAAA GCATCCTCGTCAAAGGAGCTTGTGGGCTTGGCTTGGGCTTTGCATGCCAAGACCTTCTTACCAGGTTTGAAGCTGCTGATAATGTTGATTTGGATAAAGA AAAGTACAAGGCACAGGAGGTTGACTTATTAGGGAAGATTCTTAGGACACTACTTCTGATGACAAGCCAGCTCAGTAATGCTTCATATGATATTCTAGAA AGTCTTCCTCCATTTTTCAGCATGGGTGCTAATGATATGGAAATCAATTTGACATCTGACCAGTTGCTTGAGAAGTGTGATGACTTGGAGGAAGATCCTT GGGGTGTTGCTGGTCTTGTCCTTGGCTTGGGGATCTCTTTCAGTGCAATATATAGAGCTGGGGCACATGATGCTATGCTGAAGATAAAGGACTTGATTAT ATCATGGATCCCACATGTAAACTCTCTAGTAACGAACTCATCTTTTTCCAGTGAAGGAAGGGAGAAAGCTTTATCAGTAGGATCCTGTCTTGCACTTCCC AGTGTTGTGGCATTCTGCCGGAGAGTGGAAATGATCAATGATAATGAGCTGGATCAACTATTAAAGGGCTATCATGAGCTCATATCTGAGTTATTATCTG TTAAAAAATCTGGTACTTTCCATCAGAGCTTGATGTTGGCATCATGCATTGGTGCCGGAAGTCTTATCGCTTGCATTTTGAATGAAGGTGTGCACCCTCT TGAAGCTGAATTTGTAAAAGGTTTACTGGAGATGTTTAGAAAATGCTACTGTAGTTCTTTCCCTCCTATCATCCATTTGGGTGGGATGCTTGGAGTTGTT AATGCAATGGGAGCTGGTGCAGGGATTTTGGTTCATGCCCATCACTTCTCAGCCTCAATCAAGACTGCTTGTGAACAAAAGGAATCTTCTCATATTTTGG GCCCTTTACTTTCAAGCCCTTTTTGTGAGCCACATTTGACAACATTGGTGCAAGAGATATTTCTCATTGCGCAAAATTCTGATGATCTTAAAATGCAACA AAATGCAGCTTGGGCCGTTTCATTCCTTCGAAATGGTTTGTGGTCAAAGGAACTTCTAAATGCTGAAAGCAATGATCAGACTGATGTTGTTGATAGCAAA ACAATTTCTCACAATTTTCCTGAGGACAATTTAGTTATGAAGCTGACTATATGGTTAATGCATTTAAATAACTCCGGGGCAGGGGCTATTGCACATGTGG GCACTGTTGTAACAGTTTTAAGATGCCTTTCCCGAGCTCCTAGATTGCCAACAGTGGATTGGGGATTGATCATTAGACGCTGCATGAGATATGAGGCTCA AGTGTCTGAGGTGTTGTTGCCAGATTCAGCTCTTAAGAGGGGAGCCCTTCGGGAGGAATGTGTACAATTCTCAATAGCTCATGCGAATCAATTTGATCCC CTCCTGACTTTCCTTGACGAGCTATCTGATTTGACTAGGTTCAGGACACTAGAGCTGAATCTACAGTCATGTCTGCTCTTTCATCTTGCAGGCCTGATAA AAGTATTCTCAGGTTCCAGGCTAGAGAAACTGCTTGATGATATTGCTGAATACTTTGGCTCAGATATTTTATACCAAGGGTATAGCTCTGATCAGAAGAG CTCATTGAGAATCTCATGCTGGGTGGGTCTCTATCAGTGTCTAGAAGAAGCTGTCCTTAGCTCTGTAGAGTACATATCAAACCTTGAAAAGTGCATAGAG GTGCTGTTTCACTTGTTGCCTGCATCAGAATCTGCTGCCTTCACAGGAGTGGATCTGCCAAACGCTGCAGAGGAATGGCGTGTGGCAGTTCAATGCTTGG CAAAGGCTCAAGGGGATTGGTTATTGGATTTCCTGCAGGTTCCATTAGGGGATCTTGTGCAAGGAGGTAGCCAGTCAAATGAAGTCCTAAAGAAGATTCT AGCGAAAGTGAAGCTAGTTAGGATGGGTTCCATCCCATTAACCGAGCTTGGAAGATTAAAAGCTTATATGCTGAACTCTAAATCAAAGGATATTTGGAAT TTGCATGCTGAAGTGGTAGCAGCTTTGCAATATGCAGATGGTAGTGTCAAAAGACAGTGGCTTGTTGATGCAGTGGAGATTAGTTGTGTCTCGAGCTATC CTTCCATAGCCTTAAAGTTTCTCGGTCTGCTATCTGGTAGCTGTTGCAAATATGGGTCTCTTCTGACTTTGGACCAGCTATCCGTGTTGAGTGATCTACC AGTTACCCTCCCTTCCCTTGTGACCGAACCTAGTTGGGAAGTTGTTGCGGAATCCATTGTTTCTACCCTTTGGACATCAACCGAACGCATATACTACTTG GTTACTGACAAAGGACCCCCTGACAATACAAATAGCACGCAACCTATTGACGGAAGTGAAAAGGATATTGCCTCCTTTCTATTGCATGTGATGTATCATA CCTGTACATGTTTAAAAGAGTATTTGCCTTTGGAGAAGCAGCTTAGGCTTGCCAATATGCTGGTCACTTGA
AA sequence Show only first row Show all	>Potri.001G346000.1 pacid=42789513 polypeptide=Potri.001G346000.1.p locus=Potri.001G346000 ID=Potri.001G346000.1.v4.1 annot-version=v4.1 MDSYTPLLQKTRVPQPSLQKFAVISIFSKLRSAPSYLDPDSEPGREAISQCLRSASPSVVDQSVRELCRLLLDSRLDLSRTLLELQSALEGSDPKFVGLF VKALGFVVRVGFQRNHGSWRFSSIENHPFVMILSSRTEVQSELVQQVLLFFGQNRRSGMVEICEFLRPFLNFSILRVPFSNSSSSLFARQLISSMASFCC SFPDEAIPVLKLLIGCLKHASHKNSDELKNSYYFLESIVDAYTVVLRHLVGTGLLVTEAQLFGVELSDAILSLLTCHHRHAGSSEPIVELVKRLFVAQKN LSLQYMPEISSTLLSLFVVLIQSDLEYEQLSLLKLLNFLLKWKSEKEYEVDRVKCATSEELLFTFPVINLLSSTSRSIKGEAAELLVTLEKVLVELSKAP KAGLAKEGGFPPISSLGSIAYRLLRCLWFQDQFLLPTSFLNFASSGKTDVKVMHQKPRHWASQLREYILSIVDRRKSSLSVSQSQERFTRELPPLLGAIT GVLVMHRSFGDTAIDLLGAIGIVDPKQGVPLLLAILFYSNIFTSKDISYQNMLPKLLALLPSLASHSVMIPLIIQTILPMLQKDGKPVLYATGARLLCQT WAINDRAFGSLQAILLPKGLTEFKHERNILISLAASIRDICRKNPDRGVDLILSVSACIESQDHIIKALGFQSLAHLCEADVIDFYTAWDVIGKHAVDYT TDPALAQSICLLLRWGAMDAEAYSEASRNVLQILWGIGTAVHVSHALEWARARIFAFEALSQYEVTHIQIGIPDFKTVNTDLLLRETNLDVLTAMEGFQV KIITHEHVNRRRLVKEKKIAGSKIEKLLNVFPQVLVSGIKGSAGQLPGAALLCLSFTPKDVNSQCLSRVSVDFHAGYESALVEIAASLQLSRNIFTALLS LQSWKSFMRRWIRANISSLDAKAPSVSLDKTSKAATDILKRVMRLAEESIPSSAENIALAIGALCVVLAPSTHTVKSTASKFLLNWLFQNEHDHRQWSAA ISLGLVSSCLHVTDHKQKFENITGLIKVLHGSKSILVKGACGLGLGFACQDLLTRFEAADNVDLDKEKYKAQEVDLLGKILRTLLLMTSQLSNASYDILE SLPPFFSMGANDMEINLTSDQLLEKCDDLEEDPWGVAGLVLGLGISFSAIYRAGAHDAMLKIKDLIISWIPHVNSLVTNSSFSSEGREKALSVGSCLALP SVVAFCRRVEMINDNELDQLLKGYHELISELLSVKKSGTFHQSLMLASCIGAGSLIACILNEGVHPLEAEFVKGLLEMFRKCYCSSFPPIIHLGGMLGVV NAMGAGAGILVHAHHFSASIKTACEQKESSHILGPLLSSPFCEPHLTTLVQEIFLIAQNSDDLKMQQNAAWAVSFLRNGLWSKELLNAESNDQTDVVDSK TISHNFPEDNLVMKLTIWLMHLNNSGAGAIAHVGTVVTVLRCLSRAPRLPTVDWGLIIRRCMRYEAQVSEVLLPDSALKRGALREECVQFSIAHANQFDP LLTFLDELSDLTRFRTLELNLQSCLLFHLAGLIKVFSGSRLEKLLDDIAEYFGSDILYQGYSSDQKSSLRISCWVGLYQCLEEAVLSSVEYISNLEKCIE VLFHLLPASESAAFTGVDLPNAAEEWRVAVQCLAKAQGDWLLDFLQVPLGDLVQGGSQSNEVLKKILAKVKLVRMGSIPLTELGRLKAYMLNSKSKDIWN LHAEVVAALQYADGSVKRQWLVDAVEISCVSSYPSIALKFLGLLSGSCCKYGSLLTLDQLSVLSDLPVTLPSLVTEPSWEVVAESIVSTLWTSTERIYYL VTDKGPPDNTNSTQPIDGSEKDIASFLLHVMYHTCTCLKEYLPLEKQLRLANMLVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	0	1
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	2.23	0.8539
AT5G24350			unknown protein		Potri.015G008500 [exp]	2.44	0.8518
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	4.24	0.8409
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	4.47	0.8384
AT1G63130			Tetratricopeptide repeat (TPR)...		Potri.005G046000 [exp]	6.00	0.8039
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	6.70	0.7938
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	9.38	0.8062
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.016G031900 [exp]	11.40	0.7827
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	12.48	0.8221	Pt-ABA3.1
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	12.64	0.8311

Compare expression of checked genes

Potri.001G346000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.