Plant FIBer expression Database

Potri.001G346200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27820 712 / 0 ATMDAR4 monodehydroascorbate reductase 4 (.1)
AT5G03630 440 / 4e-152 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
AT3G52880 438 / 2e-151 ATMDAR1 monodehydroascorbate reductase 1 (.1.2)
AT3G09940 402 / 4e-137 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
AT1G63940 343 / 3e-113 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G114800
[exp]
468 / 4e-163 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2)
Potri.001G099600
[exp]
345 / 4e-114 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
Potri.011G044600
[exp]
50 / 3e-06 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1)
Potri.004G036300
[exp]
46 / 5e-05 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022260
[exp]
754 / 0 AT3G27820 719 / 0.0 monodehydroascorbate reductase 4 (.1)
Lus10013079
[exp]
725 / 0 AT3G27820 694 / 0.0 monodehydroascorbate reductase 4 (.1)
Lus10035593
[exp]
455 / 6e-158 AT3G52880 668 / 0.0 monodehydroascorbate reductase 1 (.1.2)
Lus10028763
[exp]
342 / 1e-112 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
Lus10008633
[exp]
327 / 2e-108 AT3G52880 493 / 3e-174 monodehydroascorbate reductase 1 (.1.2)
Lus10006731
[exp]
54 / 1e-07 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1)
Lus10020091
[exp]
53 / 3e-07 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence
>Potri.001G346200.1 pacid=42790613 polypeptide=Potri.001G346200.1.p locus=Potri.001G346200 ID=Potri.001G346200.1.v4.1 annot-version=v4.1
ATGGGAAGAGCATTTGTGTATGTTATTCTTGGAGGAGGAGTGGCAGCTGGGTATGCAGCTCTTGAATTCACAAAGAAAGGGGTCTCACCTGGAGAACTTT
GCATCATCTCTGAAGAAACTGTTCCACCTTACGAGAGACCTGCATTGAGCAAAGGTTATTTACTTCCTGAAGCTCCAGCACGCCTTCCATCGTTTCACAC
TTGTGTTGGAGCTAATGAGGAAAGGTTGACTCCAAAATGGTATAAGGAACACGGAATTGAATTGATTCTGGGAACTCGAGTTAAGTCTGTTGATGTGAGG
CGCAAGACACTACTAACTGCAGTTGGCGAGACTATAAGCTACAAGATTCTCATTATTGCAACAGGTGCTCGGGCTTTGAAGCTTGAAGAATTTGGAGTGA
GTGGATCAGATGCGGAAAATGTTTGTTATTTGCGAGATTTAGCTGATGCAAACAGGGTTGTTGATGTGATGCAATCTTGTGCTTCTGGGAATGCTGTTGT
TATTGGTGGTGGCTATATAGGAATGGAGTGTGCTGCGTCTTTGGTGACAAATCGAATTAATGTCACTATGGTTTTCCCGGAAGTACATTGTATGGCTCGC
TTGTTTACACCCAAGATTGCAAGTTATTATGAGGGTTATTACAATTCAAAAGGAGTTCGATTCGTAAAAGGAACTGTCCTGTCATCTTTCGAGATTGACC
CCATTGGAAAGGTTACCGCTGTTAATCTTCGAGATGGAAGTCAGCTTCCTGCTGACATGGTTGTAGTGGGCATTGGGATCCGTCCAAACACGAGCCTGTT
TGAAGGCCAACTGACTTTGGAGAAAGGTGGGATCAAAGTAAATGGACGAATGCAAACGAGCAACACTTCGGTCTATGCGGTAGGAGATGTTGCTGCATTT
CCAGTGAAACTATTTGGTGAAACACGTAGGCTTGAGCATGTTGACTCTGCGCGGAAAACAGCAAAACATGCTGTTGCAGCGATAATGGAGCCTGAGAAAA
CAGATGAGTTTGATTACCTGCCCTTTTTCTATTCCAGGTTCTTCACATTTTCCTGGCAGTTTTATGGGGACAATGCAGGGGAAGTGGTGCATTTTGGGGA
TTACTCGGGGAATACAATTGGAGCATACTGGATAAGTAAAGGTCACCTTGTTGGATCTTTCCTTGAAGGAGGAACGAAAGAAGAGTATGAAGCTCTAGCC
AAGACCACAAGACTTAAGCCAGCAATAGATGACATAACTGAGCTGGAAAGGCAGGGTTTGGGCTTTGCAGTGACAGTTAGTAAGAAACCACTAACATCTC
CACCTGCTGATGTTAGTGATTCTACCCTTGTTCTGGAGAGGCCATTGTTTGCTTGGCATGCGACAGCTGGTGTTATCACGGCGGCATCAATAGCTGCGTT
CGCATATTGGTATGGAAAGAGGCGCCGGAGGTGGTGA
AA sequence
>Potri.001G346200.1 pacid=42790613 polypeptide=Potri.001G346200.1.p locus=Potri.001G346200 ID=Potri.001G346200.1.v4.1 annot-version=v4.1
MGRAFVYVILGGGVAAGYAALEFTKKGVSPGELCIISEETVPPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYKEHGIELILGTRVKSVDVR
RKTLLTAVGETISYKILIIATGARALKLEEFGVSGSDAENVCYLRDLADANRVVDVMQSCASGNAVVIGGGYIGMECAASLVTNRINVTMVFPEVHCMAR
LFTPKIASYYEGYYNSKGVRFVKGTVLSSFEIDPIGKVTAVNLRDGSQLPADMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGRMQTSNTSVYAVGDVAAF
PVKLFGETRRLEHVDSARKTAKHAVAAIMEPEKTDEFDYLPFFYSRFFTFSWQFYGDNAGEVVHFGDYSGNTIGAYWISKGHLVGSFLEGGTKEEYEALA
KTTRLKPAIDDITELERQGLGFAVTVSKKPLTSPPADVSDSTLVLERPLFAWHATAGVITAASIAAFAYWYGKRRRRW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G27820 ATMDAR4 monodehydroascorbate reductase... Potri.001G346200
[exp]
0 1
AT5G07020 proline-rich family protein (.... Potri.003G192800
[exp]
5.00 0.9727
AT1G26220 Acyl-CoA N-acyltransferases (N... Potri.008G113600
[exp]
9.38 0.9646
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.013G117000
[exp]
11.35 0.9639
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.014G154000
[exp]
12.04 0.9629
AT2G34860 EDA3 embryo sac development arrest ... Potri.001G009800
[exp]
17.77 0.9630
AT2G33450 Ribosomal L28 family (.1) Potri.010G068500
[exp]
18.81 0.9623
Potri.005G112150
[exp]
19.20 0.9593
AT2G41040 S-adenosyl-L-methionine-depend... Potri.006G060400
[exp]
23.08 0.9574
AT3G26070 Plastid-lipid associated prote... Potri.001G209600
[exp]
24.33 0.9606
AT2G41680 NTRC NADPH-dependent thioredoxin re... Potri.006G049100
[exp]
26.07 0.9498

Potri.001G346200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.