Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14660 337 / 2e-117 DEF2, PDF1B, ATDEF2 peptide deformylase 1B (.1.2) AT1G15390 106 / 3e-27 PDF1A, ATDEF1 peptide deformylase 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171800 [exp] 102 / 1e-25 AT1G15390 350 / 2e-122 peptide deformylase 1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022255 [exp] 348 / 1e-121 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2) Lus10013086 [exp] 324 / 2e-111 AT5G14660 308 / 3e-105 peptide deformylase 1B (.1.2) Lus10023133 [exp] 103 / 4e-26 AT1G15390 328 / 1e-113 peptide deformylase 1A (.1) Lus10011493 [exp] 103 / 4e-26 AT1G15390 328 / 2e-114 peptide deformylase 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01327 [poplar] [flax] Pep_deformylase Polypeptide deformylase
Representative CDS sequence Show only first row Show all	>Potri.001G346700.1 pacid=42792431 polypeptide=Potri.001G346700.1.p locus=Potri.001G346700 ID=Potri.001G346700.1.v4.1 annot-version=v4.1 ATGGCGACTTGCACTCGCAGCTCTTCGCTATCTCGTGCTCTCCTCCTTCCTTATCTCCATAGCCGAACACAAACCTTATGCGAGCCCATCAGACTCGCCC GGTTCAGTTCAACCATGAAGCAACCCAGACCTCCCTCACTATTCGTTCGCAGTCAGGCCAAGCGTGGACCTTTTCTCAAACAAGACCAAGTAGCAGCAAC TACAGGTGATCTTGAATTCGAGGCACCATTAAAAATCGTGGAATATCCAGACCCTATACTCAGAGCCAAAAACAAGCGAATTGATAGTTTTGATGACAAT TTAAAGAAATTAGTTGATGAAATGTTCGATGTCATGTACAAAACTGATGGTATTGGACTCTCCGCCCCGCAAGTAGGAATTAATGTTCAACTTATGGTAT TCAATCCAGCTGATGAGCATGGAGAAGGAGACGAAATTGTTCTTGTTAATCCCAGAGTGAATAAGTATTCGAAGAAAACTGTGCTCTTTAATGAAGGTTG CCTATCCTTTCCTGGGATATACGCCGATGTTAAGAGACCAGAATCTGTAAAGATTGATGCGAGGGACATTAATGGTGCAAGGTTTACTGTCAACTTGTCT GGTCTTCCTGCACGGGTTTTCCAGCATGAATTCGACCATTTACAGGGGATTCTGTTCTTTGATAGAATGACTGAAGAAGTTCTTGATAGTATTCGTCCAG GGCTACAGGCCTTGGAAAAGAAGTACGAGGATAAGACTGGATTCCCAAGTCCTGAAAGAATAGAAACACACAGATTGAAGAAGGTTGCCGCAGGTTTTGG AAAATTATAA
AA sequence Show only first row Show all	>Potri.001G346700.1 pacid=42792431 polypeptide=Potri.001G346700.1.p locus=Potri.001G346700 ID=Potri.001G346700.1.v4.1 annot-version=v4.1 MATCTRSSSLSRALLLPYLHSRTQTLCEPIRLARFSSTMKQPRPPSLFVRSQAKRGPFLKQDQVAATTGDLEFEAPLKIVEYPDPILRAKNKRIDSFDDN LKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGARFTVNLS GLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYEDKTGFPSPERIETHRLKKVAAGFGKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Potri.001G346700 [exp]	0	1
AT5G57345			unknown protein		Potri.006G165800 [exp]	3.31	0.9783
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.008G039300 [exp]	3.87	0.9654
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Potri.012G115800 [exp]	5.65	0.9680
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.003G030100 [exp]	6.32	0.9761
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	6.32	0.9780
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	6.48	0.9763
AT5G65840			Thioredoxin superfamily protei...		Potri.014G012100 [exp]	8.83	0.9747
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.019G081000 [exp]	11.87	0.9572
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	12.12	0.9720
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Potri.002G066800 [exp]	12.24	0.9502

Compare expression of checked genes

Potri.001G346700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.