Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14650 506 / 9e-178 Pectin lyase-like superfamily protein (.1) AT1G60590 503 / 3e-175 Pectin lyase-like superfamily protein (.1) AT1G10640 492 / 7e-171 Pectin lyase-like superfamily protein (.1) AT3G26610 368 / 4e-123 Pectin lyase-like superfamily protein (.1) AT1G48100 346 / 1e-114 Pectin lyase-like superfamily protein (.1) AT1G02460 343 / 2e-113 Pectin lyase-like superfamily protein (.1) AT4G01890 338 / 1e-111 Pectin lyase-like superfamily protein (.1) AT1G56710 332 / 7e-110 Pectin lyase-like superfamily protein (.1) AT1G70500 278 / 2e-88 Pectin lyase-like superfamily protein (.1) AT1G23460 277 / 4e-88 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189200 [exp] 547 / 0 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 536 / 0 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 362 / 7e-121 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 362 / 1e-120 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 361 / 2e-120 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 361 / 3e-120 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 362 / 4e-120 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G188300 [exp] 357 / 7e-119 AT3G26610 545 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 353 / 2e-117 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030886 [exp] 533 / 0 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 524 / 0 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 493 / 7e-172 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 494 / 1e-171 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 372 / 1e-124 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 337 / 1e-110 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 330 / 4e-108 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 325 / 2e-106 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 325 / 3e-106 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 264 / 2e-82 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.001G346800.1 pacid=42788975 polypeptide=Potri.001G346800.1.p locus=Potri.001G346800 ID=Potri.001G346800.1.v4.1 annot-version=v4.1 ATGAATTTTTTCAATCTCAAAAACTACTCTCTAATCATCCTCAACATTGTTCTGTTTCTTTGGACTTCAAGGTTTGAGACTTGCCATGCTAGAGAAGGCC ATCAGTGGAGGTTAAAAGGCAAATTCCCCCCTGCACACTCTGTGCTAAATGTGGAGAAAGAAAAAGGTCACGGTAGCACTGCTGGTAGCAGCCATCAGCA CCATGGTCGCAGTGCCATGTCGAAGTTTGCTGGTAATAACTACATGTTGGCTGACGATACCATGTCAACACAGCAAGAAGGGAGCTCTAAAGCTTTTAAT GTGTTGGAATTTGGTGCCAAAGGTGATGGAAAGACAGATGACTCAGAGGCATTTGGGGCAACGTGGGCAGCTGCTTGTAAAGTGGAGGCATCGACGATGA TAGTTCCATCTGGATATGTTTTCCTTCTCCATTCGGTATCTTTTTCAGGTCCTGGTTGTGAAGCTGACATTGTATTTCAGTTGGATGGTAAGATCATAGC TCCTACTACTCCTGGAGCTTGGAAATCCGGGCTTTTACAATGGATTGAGTTCACCAAACTGAATGGAATTACTATTCAAGGTAAAGGCATTATTGATGGA CAGGGTTCAGTCTGGTGGAACAACTTGCCAACAAATAATCTTGAAGACTCAGAGGGTGTTATGAATGCAAAAATGCCAGGAACCAAGCCAACGGCTCTAA GATTTTATGGAAGTACTCGTGTGATAGTTACCGGCATCACAATCCAAAACAGTCCTCAAACCCACCTCAAATTCGACGATTGCACAACTGTTCAAGTTTC TGATTTCAAAGCAGCATCACCTGAGAACAGCCCTAACACAGATGGAATCCATCTGGAGAACTCCCATGACGTGCTCATTTACAGTTCCGATCTTGCTTGT GGGGATGACTGTGTATCTATACAGACAGGATGCTCACAGGTGTATATACACAATGTTAACTGCGGACCAGGACATGGAATTAGTATTGGAGGGCTGGGAA GAGATAACAGCAAGGCCTGCGTTTCAAACGTGACTGTCCGAGACGTAGCAATGCTCAATACTTTAACTGGTGTCAGAATAAAGACATGGCAGGGAGGCTC TGGCTCAGTACAAGGAGTCACTTTCTCAAACATACAAGTTAGTGGAGTTAAAACACCAATCATGATCGACCAGTTCTACTGTGACAGGAGCAAATGCCAG AATGAATCTTCAGCTGTGGCTGTGTCAGACATAAACTACATAAATATAAAAGGCACATACGCATCAAAACCTGTACACTTAGCATGCAGTGATGACCTGC CATGCACTGGAATATCGTTTTCTGCCATAGAACTAAATCCAGTTCAAGAAGACAGCCAACCTTTCTGTTGGAACACATTCGGGGAACTGAGAAGCACCAC TGTTCCGCCAATTAACTGCTTAAAAATGGGCAAATCAAGAAAACCCGTTGTCAATTGCTGA
AA sequence Show only first row Show all	>Potri.001G346800.1 pacid=42788975 polypeptide=Potri.001G346800.1.p locus=Potri.001G346800 ID=Potri.001G346800.1.v4.1 annot-version=v4.1 MNFFNLKNYSLIILNIVLFLWTSRFETCHAREGHQWRLKGKFPPAHSVLNVEKEKGHGSTAGSSHQHHGRSAMSKFAGNNYMLADDTMSTQQEGSSKAFN VLEFGAKGDGKTDDSEAFGATWAAACKVEASTMIVPSGYVFLLHSVSFSGPGCEADIVFQLDGKIIAPTTPGAWKSGLLQWIEFTKLNGITIQGKGIIDG QGSVWWNNLPTNNLEDSEGVMNAKMPGTKPTALRFYGSTRVIVTGITIQNSPQTHLKFDDCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLAC GDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKTWQGGSGSVQGVTFSNIQVSGVKTPIMIDQFYCDRSKCQ NESSAVAVSDINYINIKGTYASKPVHLACSDDLPCTGISFSAIELNPVQEDSQPFCWNTFGELRSTTVPPINCLKMGKSRKPVVNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	0	1
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	1.41	0.9940
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	2.00	0.9940
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	2.44	0.9882
AT2G23440			unknown protein		Potri.007G041500 [exp]	3.60	0.9803
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	3.74	0.9831
AT4G26010			Peroxidase superfamily protein...		Potri.013G066800 [exp]	4.00	0.9823
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069650 [exp]	4.47	0.9840
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	5.65	0.9872
AT5G15180			Peroxidase superfamily protein...		Potri.007G122250 [exp]	8.83	0.9836
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080400 [exp]	8.83	0.9696

Compare expression of checked genes

Potri.001G346800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.