Plant FIBer expression Database

Potri.001G346900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44580 463 / 3e-163 zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043355
[exp]
516 / 0 AT2G44580 452 / 5e-159 zinc ion binding (.1)
Lus10019511
[exp]
500 / 6e-178 AT2G44580 456 / 2e-160 zinc ion binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09724 Dcc1 Sister chromatid cohesion protein Dcc1
Representative CDS sequence
>Potri.001G346900.1 pacid=42789395 polypeptide=Potri.001G346900.1.p locus=Potri.001G346900 ID=Potri.001G346900.1.v4.1 annot-version=v4.1
ATGGAAAAATCATCACGGATAAAAGGAGCAGAATCGGTGTTAAATCTTGAACCAAACTCTTCGATTGCTATTGGGTATCACGCTCTCTTTGGTTCTCATG
ATGATCTGATGCTCCTTGAGATTGATGAGAAACTCCTCCCTGATATCCTCCACGAGAGGGTGGCGTTAAGAGGCCAGCTGGATGAAGATTCAGTGCTTTG
TACTCAGTCAAAAACTTATGCCATTAAGTTTGTTGGAAATTCTAATTCTCCATTCCTTATACCCCCGTCAGGTCAATTCGCACTCTGTGAAAATTCACAA
GATTTTGATGGGGAAATTAATGATTTTGCACCTGTCATTAAAGTTGCACCTGGAAACATGGAGCTCGTTGAGGTTGCTCCCAAGCTTGACAGGCTTAAAT
TGCTTCTTTCAGAAAATCCTTACAGCTATGAGGATGTTTTAGAAATGGATTTCATGGAGGATGTGGAGAAAAATAAAGCAAGATTGTATAATTGGGATGA
TCTGGTTGAAAGGGTTCAGGCTAGTGATGAGGAGTTGAGGAATGGATTATGTGCTCTTTCAGCTGTGGAGATTGATGGGTTTTGGAGAATTGTTGATGAA
AAATACATGGACATGATTCTGAGGATGCTTTTGCACAATTCAATTTTGAATGACTGGTCACTGGATGCACTCAACGAAGATGATGTTGTGAGTGTGCTGG
TGTCTGATGGATTTCCTGATAAGCTTGCCTGTCATTGTTTGCATGTTTATGGCAGTAAGGTGGATGGGGATGTGGGAAGGAGTTGTGTTTGGAGGTTGGA
TGAGAGTCGTGTATGTGTGCATTTTGCAAGACAAATCTTGAGCACAGGGAAGAAGAAGATGGAGACTTTTATGGCTGAATGGTTGCAGAGGATTCCGGGT
AGGATGCAGGCAAGTTTCAACATGTTGGAAGGTGAAGTTTTGACGGAGAAGCTTGGCGTTGAGACATGGGTTTATTCCTTCAGTGTTTCTTCATTGCCCT
TAACACCTGCTGAACGTTTCAATATGCTCTTTAGAGAGCGGTCAAAATGGGAGTGGAAGGATTTACAGCCATATATAAGAGATCTAAAAGTACCTGGCCT
TTCGTCAGAAGGTTTGCTGCTCAAGTACACTCGAAGAACACAACCAACCTTAGATGCAGATCCTGTTTTCAGTTCAAGATAG
AA sequence
>Potri.001G346900.1 pacid=42789395 polypeptide=Potri.001G346900.1.p locus=Potri.001G346900 ID=Potri.001G346900.1.v4.1 annot-version=v4.1
MEKSSRIKGAESVLNLEPNSSIAIGYHALFGSHDDLMLLEIDEKLLPDILHERVALRGQLDEDSVLCTQSKTYAIKFVGNSNSPFLIPPSGQFALCENSQ
DFDGEINDFAPVIKVAPGNMELVEVAPKLDRLKLLLSENPYSYEDVLEMDFMEDVEKNKARLYNWDDLVERVQASDEELRNGLCALSAVEIDGFWRIVDE
KYMDMILRMLLHNSILNDWSLDALNEDDVVSVLVSDGFPDKLACHCLHVYGSKVDGDVGRSCVWRLDESRVCVHFARQILSTGKKKMETFMAEWLQRIPG
RMQASFNMLEGEVLTEKLGVETWVYSFSVSSLPLTPAERFNMLFRERSKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQPTLDADPVFSSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44580 zinc ion binding (.1) Potri.001G346900
[exp]
0 1
AT5G11860 SSP5 SCP1-like small phosphatase 5 ... Potri.001G054700
[exp]
10.53 0.6984
AT2G20580 RPN1A, AtRPN1a 26S proteasome regulatory subu... Potri.007G137200
[exp]
16.00 0.7243
AT5G37930 Protein with RING/U-box and TR... Potri.017G122800
[exp]
16.97 0.7666
AT5G64630 MUB3.9, NFB1, N... FASCIATA 2, Transducin/WD40 re... Potri.007G108200
[exp]
28.84 0.7505
AT1G79950 RAD3-like DNA-binding helicase... Potri.001G180200
[exp]
30.57 0.7213
AT4G37790 HD HAT22 Homeobox-leucine zipper protei... Potri.005G147100
[exp]
33.22 0.6667 HAT22.2
AT5G11020 Protein kinase superfamily pro... Potri.006G260100
[exp]
34.49 0.7002
AT3G59670 unknown protein Potri.013G127100
[exp]
35.79 0.7121
AT2G19430 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein... Potri.007G001500
[exp]
40.65 0.7076
AT1G48380 HYP7, RHL1 HYPOCOTYL 7, root hair initiat... Potri.004G069400
[exp]
44.49 0.7160

Potri.001G346900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.