Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15380 619 / 0 DRM1 domains rearranged methylase 1 (.1) AT5G14620 606 / 0 DMT7, DRM2 domains rearranged methyltransferase 2 (.1) AT3G17310 263 / 2e-78 DRM3, AtDRM3 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152200 [exp] 293 / 1e-89 AT3G17310 528 / 3e-179 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032136 [exp] 670 / 0 AT5G14620 580 / 0.0 domains rearranged methyltransferase 2 (.1) Lus10014552 [exp] 651 / 0 AT5G14620 581 / 0.0 domains rearranged methyltransferase 2 (.1) Lus10032652 [exp] 285 / 1e-86 AT3G17310 479 / 5e-160 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10043099 [exp] 44 / 0.0004 AT3G17310 148 / 9e-39 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00145 [poplar] [flax] DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence Show only first row Show all	>Potri.001G347000.10 pacid=42790518 polypeptide=Potri.001G347000.10.p locus=Potri.001G347000 ID=Potri.001G347000.10.v4.1 annot-version=v4.1 ATGGATGGTGATTCTTTATGCGGAGATAATGATGATTTCGACTGGGACAGTGAAGATGAAAAGGAAATTGAGAATTTTGCCTCATCTTCATCATCAAGTC TGAGACTTCCTCAAGTGGAAACTAGGTCAAGCTCAGCGGAGGCAAGCTCATCTGTAGGTTCATCTTCTGGTTCCAAAATGATTGATCATTTTGTAAAAAT GGGGTTTCCTGAAAAAATGGTTGCCGAAGCAATTCAGGAAAACTGTAAAGGAGAGGAAGATGAAGATTCAATACTCGAAACACTTCTTAAGTACTCGACA AGTTCATCTGCAAGCTCTTCTGGCTCCAAATTATTTGATCGTTTTGTAGGGATGGGGTTTGCAGAGAAAATGGTTGCCAAAGCAATTAAGGAAAATGGAG AGGGAGATGCAGATTCAGTTTTGGAAACTCTCCTCACATACGCAGCCATTGGAAAATCTCCTCAAGAACAGCCCAACAATGATTCTGATCATTGCTCCTC AGGACATGAAGGGAGCTTTCTGGATGATTTTTCAGATGTAGATAGTGCTGATGATGAGGTAATTACAAAGACTGTTTCTGACGAGGATAATAAATTAGCC TTTTTAAGAAGGATGGGTTACAAAGAGGCAGATGCTTCAATAGCCATAACTAGATGTGGAACGGAAGCCACAATTTCAGAGCTGGCAGATTTCATTTGTG CAGCTCAAATTGCAAAGGCAGAGGATGCTTTCTTTGCTGAAGATGAGAAAAAGCCTAAGCATTTGGACAAACAGAAGAAGAGGAGTTTTTTGGAGTCTGA CGTGTTGGAAAAGAAAAGGCAGAAGGGGTTGGAGAATGGAGATGATGAGGGAGTTCGGCTCCCAAATCCAATGGTTGGGTTTGGGGTGCCTACAGAACCA GGAATTGTTACTCGTAGAACACTTTCAGAGGCTGCCATTGGGCCCCCCTTCTTTTATTATGAAAATGTAGCTCTGGCTCCAAAAGGGGTTTGGCAGACAA TTTCAAGGTTTTTGTACGATGTGGAGCCAGAATTTGTGGATTCCAAGCACTTTTGTGCTGCTGCAAGGAAAAGGGGGTACGTTCACAATCTTCCCATTCA TAACAGATTTCCTCTTCTTCCGCTTCCTCCAAACACAATACATGAAGCTCTACCCTTAACAAGGAAATGGTGGCCTGCATGGGATGAGAGAACAAAACTG AATTGCTTACAGACTTGCATTGCTAGTGCAAAGCTGACAGAGAGGATACGGAAGGCCCTCGAAGCCTATGAAGGGGAGCCCCCTTTGCATGTCCAGAAGT TTATAATGGATGAATGTCGGAAATGGAACCTGGTTTGGGTTGGAAGGAATAAGGTTGCTCCTCTTGAGGCTGATGAAGTTGAAATGCTTTTGGGATTTCC AAGGAACCACACCAGGGGAGGCGGTATAAGTAGGACTGACAGATACAAGTCACTAGGTAACTCATTCCAGGTTGATACTGTTGCTTATCATCTGTCAAGT TTGAAAGACTTGTTCCCAGGAGGGATCAATGTTCTGTCTCTTTTCTCTGGAATCGGTGGTGCCGAAGTAGCTCTTCATCGGCTTGGTATTCGTTTGAAGA ATGTGGTGTCAGTTGAGATCTCAAATGTGAATAGGAGTATCATGAGTTGCTGGTGGGAGCAAACAAATCAGACTGGGAATTTGATCCACATTGAAGATGT GCAACACCTAACTGCTGATAGGTTGGAGCAGTTGATGAACATGTATGGCAGTTTTGATCTTGTTGTGGGGGGGAGTCCATGCAACAATCTGGCAGGTAGC AATCGCCATCACCGTGATGGACTTGAGGGCAAAGAATCTTCCCTCTTCTTTGATTACTGTCGTATCCTAGATGTGGTTAAGAATTTAACATCTAGATACA GTTGA
AA sequence Show only first row Show all	>Potri.001G347000.10 pacid=42790518 polypeptide=Potri.001G347000.10.p locus=Potri.001G347000 ID=Potri.001G347000.10.v4.1 annot-version=v4.1 MDGDSLCGDNDDFDWDSEDEKEIENFASSSSSSLRLPQVETRSSSAEASSSVGSSSGSKMIDHFVKMGFPEKMVAEAIQENCKGEEDEDSILETLLKYST SSSASSSGSKLFDRFVGMGFAEKMVAKAIKENGEGDADSVLETLLTYAAIGKSPQEQPNNDSDHCSSGHEGSFLDDFSDVDSADDEVITKTVSDEDNKLA FLRRMGYKEADASIAITRCGTEATISELADFICAAQIAKAEDAFFAEDEKKPKHLDKQKKRSFLESDVLEKKRQKGLENGDDEGVRLPNPMVGFGVPTEP GIVTRRTLSEAAIGPPFFYYENVALAPKGVWQTISRFLYDVEPEFVDSKHFCAAARKRGYVHNLPIHNRFPLLPLPPNTIHEALPLTRKWWPAWDERTKL NCLQTCIASAKLTERIRKALEAYEGEPPLHVQKFIMDECRKWNLVWVGRNKVAPLEADEVEMLLGFPRNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSS LKDLFPGGINVLSLFSGIGGAEVALHRLGIRLKNVVSVEISNVNRSIMSCWWEQTNQTGNLIHIEDVQHLTADRLEQLMNMYGSFDLVVGGSPCNNLAGS NRHHRDGLEGKESSLFFDYCRILDVVKNLTSRYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15380		DRM1	domains rearranged methylase 1...		Potri.001G347000 [exp]	0	1
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.005G071600 [exp]	1.41	0.7851
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.019G080800 [exp]	1.41	0.7075
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.019G130900 [exp]	1.73	0.6969	Pt-P68.1
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	7.74	0.6558
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	9.16	0.6877
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	9.59	0.6962
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	12.64	0.6690
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	21.33	0.6914
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	41.56	0.5919
AT2G27900			unknown protein		Potri.009G002900 [exp]	44.78	0.6453

Compare expression of checked genes

Potri.001G347000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.