Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14610 821 / 0 DEAD box RNA helicase family protein (.1.2) AT3G01540 782 / 0 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 640 / 0 DEAD box RNA helicase family protein (.1) AT1G55150 446 / 4e-149 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 438 / 8e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 324 / 5e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 318 / 4e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 317 / 7e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 315 / 2e-97 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G31970 313 / 3e-97 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071400 [exp] 947 / 0 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 633 / 0 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.003G038300 [exp] 453 / 9e-152 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 451 / 1e-149 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 440 / 4e-145 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 323 / 4e-98 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 315 / 2e-97 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 325 / 2e-96 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G007900 [exp] 310 / 2e-95 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032135 [exp] 834 / 0 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 832 / 0 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 823 / 0 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 643 / 0 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 617 / 0 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037646 [exp] 455 / 3e-152 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 452 / 5e-151 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 443 / 4e-146 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 440 / 5e-145 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 319 / 5e-99 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0680 [poplar] [flax] WW PF00397 [poplar] [flax] WW WW domain
Representative CDS sequence Show only first row Show all	>Potri.001G347100.1 pacid=42788674 polypeptide=Potri.001G347100.1.p locus=Potri.001G347100 ID=Potri.001G347100.1.v4.1 annot-version=v4.1 ATGGCCGCTACAGCGACTGCGTCTTCCGTGGGTCCACGGTATGCACCGGAGGACCCGACTCTCCCGAAACCATGGAGAGGTTTAGTTGATGGTAAAACCG GTTACCTTTATTTTTGGAATCCAGAGACCAATGTTACTCAGTATGAGAGGCCTACTCTGCCGAAGTCTGTTTCGTCACTACCCATTACTTCTTCTGTTCA AGTTCACCAGTCTTCTCATCGGGGGTATAATCCCTCGGTTAAGGAAGATGATAGGTATGGAAGAGCCAACAATGCTGGATCAAAACCTGATGCTGTAACC AGGAGTATTAGCAGTAGTAATCAGAGTGCAAGAGGTGCAGCAATTCAATCTGAAAATGTCCCAAATGGAACAGCCAATGGACTCTCTGCTCGGGTATATG GATCATCAGCTGGAGGAAGTGGTATGTCTGGAGAGGCTTATCGCCGCCGCCATGAAATAACTGTCACTGGTGATGAAGTGCCCCCTCCTCTAACATCATT TGAAACTACTGGCTTTCCTTCCGAGATTTTAAAAGAGGTACTCAATGCAGGGTTCTCTGCCCCAACTCCAATTCAGGCACAATCATGGCCGATCGCATTG CAAAGTAGAGATATAGTGGCCGTTGCCAAGACTGGTTCGGGTAAAACACTAGGTTACCTAATTCCAGGCTTTATCCATCTCAAGCGCAGCTGTAATGACC CTCGACTGGGTCCAACAGTGCTGGTACTGTCACCAACAAGAGAACTGGCAACACAGATACAAGTTGAAGCTGTGAAGTTTGGAAAATCATCAAGATTTTC CTGCACGTGCTTGTATGGAGGAGCACCAAAGGGTCCCCAGTTAAAAGAACTAGACAGAGGAGCAGATATTGTGGTTGCCACTCCTGGTCGCTTGAATGAC ATTCTTGAAATGAGGAGAGTTAGCCTCAGTCAAGTTTCTTACCTTGTACTAGATGAGGCTGATCGCATGTTGGACATGGGTTTTGAACCCCAGATACGAA AGATTGTAAAGGAAGTGCCTGCTCGTCGCCAGACCCTCATGTACACAGCAACTTGGCCAAAGGAAGTTAGAAAAATTGCAGCAGATCTTCTTGTCAATCC TGTTCAGGTTAATATCGGCAACGTAGATGAGCTTGTGGCAAACAAGTCAATCACACAGTATGTTGAATTATTGGCACCCTTGGAAAAACATAGACGGTTA GAGCAGATATTGCGGTCACAAGAATCTGGATCAAAGATTATTATTTTTTGCTCAACCAAGAAGATGTGTGATCAACTTTCTCGCAACCTAACCCGCCAAT TTGGAGCTGCTGCTATTCATGGTGACAAATCTCAGAGCGAGAGGGATTATGTTCTGAGTCAGTTCCGAACTGGGAGGTCTCCAATACTTGTAGCTACTGA CGTAGCTGCTCGAGGACTAGACATTAAAGATATCAGAGTGGTTATCAATTATGACTTCCCTACTGGAGTGGAAGATTATGTTCACAGGATTGGGAGAACT GGGAGGGCAGGGGCCACTGGAGTGGCCTACACATTCTTTGGTGACCAGGATGCAAAGCATGCTTCAGATCTCATCAAAGTTCTGGAAGGAGCAAATCAGC AGGTCCCTCCAGAGATACGTGATATGGCTTCACGTGGTGGTGGGGGGATGGGAAGGTTTAGACGTTGGGGCTCTGGCGGTCATGATGGGGGGCGCGGTGG ACGCAGTGATTTTGGTTATGGTGGAAGGGGTAGTTGGGGAATGTCCAACTCCTCTTCTAGCAGACCAGAAAGAGGTGGAGGCCGTGGAAATGACCATGAG TCGCGGGACAGGTATGATCGGGGATACGGTGATGGACATGATAAAGGCCACAATCACAATCGGAGCCCTGACAAGGGATCAGGTTGGGGTGATCGCAGTA AAAGTTGGAACCATGATAAAAGCCATAGTCGGAGCCCGGACAGGCATGATAGGGCTCCACCAGTGCGCAGTTTTCACCAGGCAATGATGGAAAAGGGTCG GGCATCCATCCCTGTTCAAATTCAGCACGAGAGGTCTCGATCACCTAGTGCTGGTGGTGGTGGTAGCAGTTTTCACAAGGCAATAATGGAAAGGGGTCGG GCATCCCCACCACGTCAAGTCCACCGCGAGAGGTCTCGATCCCCTTATCATGGTAGTGGTGGGAGTTTCCACAAGGAAATGATCGAACAAAGTCGGCCAT CCTCTTACCATGCCCAGCAGGAGCGGGGGAGATCACCGAGCAGTGGACATGATAGAGGATTTAATGCTGGGCCTCGTTCTTATGTTGGAGAAGAAGAGGA GGAGGGAATGATTCCAGCCGATGAAGATGGCATGATACCTCCAGATGATAATGGCATGTTTCGAGGAGCAGAGGAAAAACGCCACTGA
AA sequence Show only first row Show all	>Potri.001G347100.1 pacid=42788674 polypeptide=Potri.001G347100.1.p locus=Potri.001G347100 ID=Potri.001G347100.1.v4.1 annot-version=v4.1 MAATATASSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTLPKSVSSLPITSSVQVHQSSHRGYNPSVKEDDRYGRANNAGSKPDAVT RSISSSNQSARGAAIQSENVPNGTANGLSARVYGSSAGGSGMSGEAYRRRHEITVTGDEVPPPLTSFETTGFPSEILKEVLNAGFSAPTPIQAQSWPIAL QSRDIVAVAKTGSGKTLGYLIPGFIHLKRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQLKELDRGADIVVATPGRLND ILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQYVELLAPLEKHRRL EQILRSQESGSKIIIFCSTKKMCDQLSRNLTRQFGAAAIHGDKSQSERDYVLSQFRTGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRT GRAGATGVAYTFFGDQDAKHASDLIKVLEGANQQVPPEIRDMASRGGGGMGRFRRWGSGGHDGGRGGRSDFGYGGRGSWGMSNSSSSRPERGGGRGNDHE SRDRYDRGYGDGHDKGHNHNRSPDKGSGWGDRSKSWNHDKSHSRSPDRHDRAPPVRSFHQAMMEKGRASIPVQIQHERSRSPSAGGGGSSFHKAIMERGR ASPPRQVHRERSRSPYHGSGGSFHKEMIEQSRPSSYHAQQERGRSPSSGHDRGFNAGPRSYVGEEEEEGMIPADEDGMIPPDDNGMFRGAEEKRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14610			DEAD box RNA helicase family p...		Potri.001G347100 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	4.58	0.8820	CHB904,CHB4.1
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.002G139500 [exp]	5.47	0.8634
AT2G24960			unknown protein		Potri.006G265900 [exp]	17.29	0.8305
AT1G27750			nucleic acid binding (.1)		Potri.014G017000 [exp]	19.59	0.8508
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	22.02	0.8456
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	22.13	0.8322
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	22.31	0.8444
AT5G17440			LUC7 related protein (.1)		Potri.019G055000 [exp]	22.75	0.7807
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	26.49	0.8070
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.001G469500 [exp]	26.83	0.8357	Pt-VCS.1

Compare expression of checked genes

Potri.001G347100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.