Plant FIBer expression Database

Potri.001G347400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27770 314 / 1e-106 unknown protein
AT5G62960 296 / 3e-99 unknown protein
AT1G10660 293 / 3e-98 unknown protein
AT2G47115 180 / 2e-54 unknown protein
AT1G70505 0 / 1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G078200
[exp]
321 / 6e-109 AT5G62960 382 / 8e-133 unknown protein
Potri.010G042600
[exp]
315 / 6e-107 AT1G10660 372 / 1e-129 unknown protein
Potri.012G082400
[exp]
313 / 4e-106 AT5G62960 387 / 1e-134 unknown protein
Potri.014G115200
[exp]
213 / 1e-66 AT2G47115 340 / 4e-117 unknown protein
Potri.002G190200
[exp]
208 / 9e-65 AT2G47115 344 / 1e-118 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032130
[exp]
362 / 5e-125 AT5G62960 303 / 2e-101 unknown protein
Lus10014556
[exp]
353 / 2e-121 AT5G62960 305 / 3e-102 unknown protein
Lus10042109
[exp]
300 / 1e-100 AT5G62960 397 / 1e-138 unknown protein
Lus10027692
[exp]
279 / 8e-93 AT5G62960 355 / 2e-122 unknown protein
Lus10029133
[exp]
262 / 6e-85 AT1G10660 338 / 5e-115 unknown protein
Lus10002386
[exp]
230 / 4e-74 AT5G62960 320 / 5e-109 unknown protein
Lus10039964
[exp]
220 / 8e-68 AT5G62960 247 / 7e-78 unknown protein
Lus10009991
[exp]
215 / 8e-68 AT1G10660 246 / 3e-80 unknown protein
Lus10038056
[exp]
214 / 1e-67 AT1G10660 252 / 1e-82 unknown protein
Lus10013029
[exp]
181 / 1e-51 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G347400.10 pacid=42789298 polypeptide=Potri.001G347400.10.p locus=Potri.001G347400 ID=Potri.001G347400.10.v4.1 annot-version=v4.1
ATGCAGCAGCTAATGGTTACTTCCGACACAACCACCCTGAGTTACTGGTTGAACTGGAGGGTCTTGCTTTGTGCAATCTGGGTATTTACGCCTATGGTTG
TAGCATTCTTCCTTATACGGAAATATGAATGTTTGGGATCATGCAAAGGAAAAACTCAGCAAGAGGTAGCTCATTCGTTGTGCGGCAATCAACCGTGGAG
ATCATGTCTTAATCAAATTCACCCTATTTGGTTGTTGGCTTATCGACTTCTTTCCTTCTCTTTGCTTTTGCCGATCCTCATTGCCAAAGTTTCTCGTAAT
GGATTCGTCATGTTTTATTACTATACCCAGTGGACTTTCACTTCTGTTACCATTTATTTTGGGTTTGGATCACTGCTTTCCATTTATGGATGTTACCTGT
ATCACAAAACTGGATTTTATGAACCTCATGTCGGGAGAGACACTGAGCAAGGGTATTACATGCCTCTACCTCATGGGGACAGGGCAAATGAACTGGAAAA
AAGAAAATCCTCAGAACCCCCAGAGGAAATTCATTCCTCTCAAGCTGCAAGCATTTGTTGTTATCTTTTTCAGGTTATATTCCAGATGACTGCTGGTGCA
GTGATGCTTACTGATTCTATTTATTGGATCATTATTTTTCCGTTTCTTACCATGAGAGATTACTCACTGGATTTTTTAACAGTGAATATGCATACACTCA
ATGCTGTCTTACTTCTTGGGGACACAGCTTTGAATTGCTTGCCATTCCCTTGGTTTCGGGTTTCTTACTTCATTCTGTGGACTGGTATTTTTGTCATTTT
CCAGTGGATTGTGCATGCTTGTGTATCAATTTGGTGGCCATACCCATTTCTTGACTTGTCCTCTTCATATGCCCCATTATGGTACTTACTCGTGGCAATG
ATGCATATACCAAGCTATGGCCTCTTCATGTTATTTATCAAAATAAAGCATAACCTGTTGACAAAATGGTTCCCTCAGTCCTATAGCTGTTAA
AA sequence
>Potri.001G347400.10 pacid=42789298 polypeptide=Potri.001G347400.10.p locus=Potri.001G347400 ID=Potri.001G347400.10.v4.1 annot-version=v4.1
MQQLMVTSDTTTLSYWLNWRVLLCAIWVFTPMVVAFFLIRKYECLGSCKGKTQQEVAHSLCGNQPWRSCLNQIHPIWLLAYRLLSFSLLLPILIAKVSRN
GFVMFYYYTQWTFTSVTIYFGFGSLLSIYGCYLYHKTGFYEPHVGRDTEQGYYMPLPHGDRANELEKRKSSEPPEEIHSSQAASICCYLFQVIFQMTAGA
VMLTDSIYWIIIFPFLTMRDYSLDFLTVNMHTLNAVLLLGDTALNCLPFPWFRVSYFILWTGIFVIFQWIVHACVSIWWPYPFLDLSSSYAPLWYLLVAM
MHIPSYGLFMLFIKIKHNLLTKWFPQSYSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G27770 unknown protein Potri.001G347400
[exp]
0 1
AT3G47570 Leucine-rich repeat protein ki... Potri.017G151400
[exp]
9.69 0.8921
AT3G56010 unknown protein Potri.008G070700
[exp]
10.86 0.8950
AT1G29050 TBL38 TRICHOME BIREFRINGENCE-LIKE 38... Potri.011G064700
[exp]
11.22 0.8858
AT2G27690 CYP94C1 "cytochrome P450, family 94, s... Potri.013G075600
[exp]
12.00 0.8896
AT1G04110 SDD1 STOMATAL DENSITY AND DISTRIBUT... Potri.002G256300
[exp]
12.12 0.8828 Pt-SDD1.1
Potri.002G167500
[exp]
14.28 0.8895
AT2G20340 Pyridoxal phosphate (PLP)-depe... Potri.002G255600
[exp]
16.43 0.8503
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800
[exp]
22.24 0.8882
AT5G62680 Major facilitator superfamily ... Potri.012G071500
[exp]
26.66 0.8788
AT4G38660 Pathogenesis-related thaumatin... Potri.005G112600
[exp]
26.70 0.8467

Potri.001G347400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.