Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G42750 92 / 5e-21 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G05345 62 / 3e-11 Chaperone DnaJ-domain superfamily protein (.1) AT5G59610 58 / 1e-09 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G17830 58 / 3e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G09350 56 / 6e-09 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 56 / 8e-09 DNAJ heat shock family protein (.1) AT5G05750 56 / 9e-09 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G57340 56 / 1e-08 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT4G39960 56 / 1e-08 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072600 [exp] 148 / 4e-41 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G143400 [exp] 96 / 2e-22 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G072700 [exp] 56 / 8e-09 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.010G036200 [exp] 56 / 1e-08 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.005G073900 [exp] 56 / 1e-08 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.013G109000 [exp] 55 / 1e-08 AT4G09350 310 / 4e-107 NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 54 / 1e-08 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 54 / 1e-08 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G094900 [exp] 56 / 2e-08 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022246 [exp] 347 / 4e-120 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008768 [exp] 313 / 1e-107 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10040990 [exp] 147 / 9e-41 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020749 [exp] 99 / 9e-24 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004485 [exp] 67 / 7e-13 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10029916 [exp] 63 / 3e-11 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10002355 [exp] 60 / 1e-10 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10020949 [exp] 59 / 2e-09 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10003150 [exp] 57 / 2e-09 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10000631 [exp] 58 / 3e-09 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0344 [poplar] [flax] 4Fe-4S PF13459 [poplar] [flax] Fer4_15 4Fe-4S single cluster domain
Representative CDS sequence Show only first row Show all	>Potri.001G347600.1 pacid=42790824 polypeptide=Potri.001G347600.1.p locus=Potri.001G347600 ID=Potri.001G347600.1.v4.1 annot-version=v4.1 ATGTCAGTTTCTCTACTCCCAATTGATCATCTTTCAATGCCAAAAGCTTTCCAAATTCACGCCAGCTACTTCAATCCTTCCACAACCATCTCAAGATGTA GGCACAAATGCTTCCCAGTCAGATGTTGTGATAGAAGAAGGGAAGGGAGTGCAAGAACAAAGAAGAATTACTATGAGTTGCTGGGAGTTTCAGTTGATTC CAGTACCCAGAAAATTAAAGAGGCTTATAGGAAGTTACAAAAGAAATATCACCCTGATATTGCTGGACATAAGGGCCATGAGTACGCTTTGATGCTGAAT GAAGCCTATAATGTCCTGATGACAGATGATCTTAGGACAAAGTATGATGCTTCCATTGGTCATATGACAGTGCAGATTGGGAAAAACAACTATGTTAATG TCATGGGTTCCAGCTCATGGAAAGGGCCATTGAGACCCCAAGCTCTGTTTGTTGATGAAAATGCATGCATAGGGTGCAGAGAATGTGTGCACCATGCTAG CAACACATTCATCCTGGATGAATCAATTGGATGCGCACGAGTAAAAACTCAATATGGAGATGACGACCAAAAAATAGAGGTATCAATTGAATCATGTCCT GTGAACTGCATCTACTGGGTGGATAGGGAAGAATTGGCACTTCTTGAGTTCCTAATTCAACCACAACTAAAGCAAGGTTATGGTGTATTTGGGCAAGGCT GGGAAAGAACTGCTAATGTTTTCATGGCAGCAAAGACATTGAGCAAGCAGTTGAGACAGCAGGCTGAGCATAATCACAACAATGTGCGAACAACTGTAGA GGAAGAAACGCCTGCTCAAGCTGAGGCTCGTGCCAATGCTAGCTTGAAAATCAAGATGGAGAGCTTCTCCAAAATCTGGGATTCATTGAATGGAATTTTT GGTTAA
AA sequence Show only first row Show all	>Potri.001G347600.1 pacid=42790824 polypeptide=Potri.001G347600.1.p locus=Potri.001G347600 ID=Potri.001G347600.1.v4.1 annot-version=v4.1 MSVSLLPIDHLSMPKAFQIHASYFNPSTTISRCRHKCFPVRCCDRRREGSARTKKNYYELLGVSVDSSTQKIKEAYRKLQKKYHPDIAGHKGHEYALMLN EAYNVLMTDDLRTKYDASIGHMTVQIGKNNYVNVMGSSSWKGPLRPQALFVDENACIGCRECVHHASNTFILDESIGCARVKTQYGDDDQKIEVSIESCP VNCIYWVDREELALLEFLIQPQLKQGYGVFGQGWERTANVFMAAKTLSKQLRQQAEHNHNNVRTTVEEETPAQAEARANASLKIKMESFSKIWDSLNGIF G

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23240			DNAJ heat shock N-terminal dom...		Potri.001G347600 [exp]	0	1
AT3G15840		PIFI	post-illumination chlorophyll ...		Potri.001G204300 [exp]	1.00	0.9867
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	3.46	0.9748
AT2G48070		RPH1	resistance to phytophthora 1 (...		Potri.014G137300 [exp]	4.24	0.9758
AT1G51100			unknown protein		Potri.011G132900 [exp]	4.89	0.9674
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	7.74	0.9618
					Potri.011G080900 [exp]	9.16	0.9672
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	11.13	0.9704
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	11.40	0.9676
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	13.41	0.9667
AT1G51110			Plastid-lipid associated prote...		Potri.001G011700 [exp]	16.73	0.9630

Compare expression of checked genes

Potri.001G347600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.