Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14580 1225 / 0 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G03710 310 / 8e-91 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT3G61620 69 / 1e-12 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT5G30510 62 / 1e-09 ARRPS1, RPS1 ribosomal protein S1 (.1) AT4G27490 55 / 7e-08 3'-5'-exoribonuclease family protein (.1) AT4G29060 53 / 1e-06 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT3G46210 47 / 3e-05 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT2G47220 47 / 6e-05 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT3G23700 46 / 0.0001 Nucleic acid-binding proteins superfamily (.1) AT3G07750 43 / 0.0007 3'-5'-exoribonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040100 [exp] 283 / 2e-81 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 283 / 3e-81 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G094300 [exp] 67 / 5e-12 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.010G150300 [exp] 63 / 5e-10 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.008G101100 [exp] 62 / 1e-09 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 54 / 5e-07 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.018G083900 [exp] 53 / 1e-06 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.004G212500 [exp] 51 / 2e-06 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 50 / 2e-06 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008763 [exp] 1309 / 0 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10022250 [exp] 1290 / 0 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 293 / 1e-86 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10013636 [exp] 293 / 2e-84 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10017100 [exp] 61 / 3e-09 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 61 / 3e-09 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10001331 [exp] 52 / 5e-07 AT3G03710 161 / 1e-45 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10043229 [exp] 54 / 6e-07 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 54 / 7e-07 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10037395 [exp] 48 / 1e-05 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [poplar] [flax] PF03725 [poplar] [flax] RNase_PH_C 3' exoribonuclease family, domain 2 CL0329 [poplar] [flax] PF03726 [poplar] [flax] PNPase Polyribonucleotide nucleotidyltransferase, RNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G347900.2 pacid=42790409 polypeptide=Potri.001G347900.2.p locus=Potri.001G347900 ID=Potri.001G347900.2.v4.1 annot-version=v4.1 ATGCCGTCGATAATGGCAGCAAGTAGATCAAATCCTCTATTAAACTCGCTCCCTCGCTTCCTCACATGGCGATCCTTAGGGTTCCGCACCATTTGTAGTG GCCGTCTCGGCTTCGCTCCCTCCGATCCCGACCCGGAACCACCCGTTTCCACCGCCGGTACCAAGTTCCTCGAGACCTTTAGAGAAGAATTCGAGATCGG TTCGCGCTTAATCACTTTTGAAACTGGCAAAATTGCTCGATTCGCTAATGGCTCTGTCGTTTTGGGGATGGAAGAGACTAAAGTGCTTTCTACTGTCACT TCTTCTAAAGGCGATTCTGTTCGCGATTTTTTGCCTCTCACAGTTGATTATCAAGAAAAGCAATTTGCTCAAGGTGTGATTCCTAGTACTTACCTGCGAA GAGAGGGTGCACCGAAAGAACGCGAACTTTTATGCGGTCGGCTTATTGATCGACCTATAAGACCACTCTTTCCTGCTGGATTTTACCATGAGGTTCAGGT TATGGCAAGTGTTCTTTCTTCAGATGGGAGACGTGATCCAGATGTAATGGCAGCTAATGCAACGTCTGCTGCTCTTATGCTGTCTGACATTCCTTGGGGT GGTCCCATCGGAGTGATTCGCATAGGAAGAATTTGCGGACAGTTTGTTGTTAATCCAACCATGGATGAGCTTAGCTTAAGTGATCTGAACTTAGTATATG CCTGTACAAAGGACAAAACTCTAATGATAGATGTGCAAGCTGGCGGGATCGCAGAGAAAGATCTAGAAGCTGGGTTAAGACTGGCACATCCAGAGGCAGT GAAGTATCTTGAACCTCAAATCAGACTAGCCGCGAAAGCTGGGAAGCATAAGAAGGATTACAAACTATCTTTGGTGTCAGATAGAACATTGGAAAAAGTT CGAAACTTGACAGAAGCAAAGATTGAAGCTGTCTTTACAGATCCTTCGTATGGTAAGTTTGAGCGTGGAGAAGCCTTAGACAACATTGCACAGGAAGCAA AAAGAACCCTTGAAGAAGAATGTGATACAGAAAGCTTAACAGTTCTTTCGAAGGTTGTAGACAGAGTACGAAAAGGGGTTGTCCGCAACAGGATTATTGC AGAGGGATTTAGAGTTGATGGGAGACGCCTTGATGAAGTGAGGCCATTGTATTGTGAAGCAGGTTATTTACCTAATTTGCATGGATCTTCACTTTTTTCT CGTGGAGATACCCAGGTTCTTTGTACTGTCACTCTTGGTGCACCTAGGGATGCTCAACGTTTGGATTCCTTGGTCGGACCCCCAACAAAGCGTTTCATGC TTCATTATAGTTTCCCTCCATTTTCAATTAATGAAGTTGGCAAAAGAGTTGGTCTGAACAGACGTGAAGTTGGTCATGGAACTCTTGCAGAGAAAGCCTT GCTTGCTGTTTTGCCTCCTGAGGATGATTTTCCATATACAGTTCGCATCAATTCAGAAGTAATGGCATCTGATGGTTCAACTTCAATGGCAACTGTTTGT GGAGGCAGTGTGGCCATGATGGATGCTGGCATTCCATTGCAAGAACATGTTGCTGGTGTTTCCGTGGGTCTTGTTAGTGAAGTTGATCCATCAACTGGTG AAATTAAGGACTATCGTATAGTGACTGATATTTTGGGCCTGGAAGATCATTTAGGGGACATGGACTTCAAAATTGCTGGAACACGTAAGGGAGTTACTGC AGTTCAGTTGGATATAAAACCTGCTGGAATTCCTTTAGATATCATTTGTGAGTGTTTAGAGCCAGCTCTTAAAGGGCGTCTTCAAATCCTTGCCCGCATG GATCAAGAGATTAGTGCACCACGCACTCAGGATCATAGAAATTCTCCTCGATTGGCTACCTTAAAGTTCAGCAATGATGCTCTTCGTCGCTTGATTGGGC CTCTAGGTGTTCTTAAGAGAAAAATTGAAGAGGATACAGGCGCACGGATGTCTGTAAGCGACGAAACACTTACTATACTTGCCAAGAATCAGACTGTACT GGAGAGAGTGCAAGAGAAGATTGATTTTATAATTGGCCGTGAAATTGAAGTTGGTGGGATTTACAAAGGCATCGTTTCTTCAATAAAGGAATATGGTGCT TTCGTGGAGTTTAATGGTGGCCAGCAAGGTCTGCTACATGTTTCTGAATTATCACATGAACCGGTCTCCAAGATTTCAGATGTCATATCTGTTGGGCAGC AGCTTTCCTTGATGTGCATAGGGCAGGATGTCCGTGGCAACATCAAATTATCCCTTAAAGCAACTTTACCCCAGTTGAAATCTAAGAAAAATAATGTTAC TGAGGAACCTGTTCCTGTTATTAAAGAAGCACCTAAAGTTTGGACCTCAGTTGGGAATTTGCCTAATGAACAAGAAGAGCAGAAACTTACAGATGCTGAG TTGATGTTAAGTAGGAGCACCGTAAAGCCTTCAACTTCCTCGAATCCTGGTTTTCTGATTCGAAGTGCTGCAGAGTGTGATGAGGAGGACAAAACTGTCA GTTTGAATCAGGGTTCTAAGAGCAATTCTAAAACTTTACGGGCTACGAAACGGGATCGCAAGCGAAAAACAAAGGTGCCTGAAAGTGATGATTCTGATGC ATCAATCTATAGTTCTGGTCACTCTTCACATACTGTAGATCGTTTGAACGACGAGGACGCCAAAGTGGTGTCACCTTTGAGTGCAAAAAGCCTGAAACTT GGAATGAAGATTGCTGCCAAGGTTTATCAAATTCGTGCACTTGGGTTAGTCCTTGATTTGGGTAATGGAGTTCGTGGAATGTATCGGTTTGAGACCAATG GAAAGAGGGACTTTGAGATTGGTGATGAGTTGCTAGTCAAGTGTACAAGCTTTTCTAGCAAGGGACTTCCAGTTATGTCCTTGGTGGATGATGAGTGA
AA sequence Show only first row Show all	>Potri.001G347900.2 pacid=42790409 polypeptide=Potri.001G347900.2.p locus=Potri.001G347900 ID=Potri.001G347900.2.v4.1 annot-version=v4.1 MPSIMAASRSNPLLNSLPRFLTWRSLGFRTICSGRLGFAPSDPDPEPPVSTAGTKFLETFREEFEIGSRLITFETGKIARFANGSVVLGMEETKVLSTVT SSKGDSVRDFLPLTVDYQEKQFAQGVIPSTYLRREGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGRRDPDVMAANATSAALMLSDIPWG GPIGVIRIGRICGQFVVNPTMDELSLSDLNLVYACTKDKTLMIDVQAGGIAEKDLEAGLRLAHPEAVKYLEPQIRLAAKAGKHKKDYKLSLVSDRTLEKV RNLTEAKIEAVFTDPSYGKFERGEALDNIAQEAKRTLEEECDTESLTVLSKVVDRVRKGVVRNRIIAEGFRVDGRRLDEVRPLYCEAGYLPNLHGSSLFS RGDTQVLCTVTLGAPRDAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDDFPYTVRINSEVMASDGSTSMATVC GGSVAMMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIVTDILGLEDHLGDMDFKIAGTRKGVTAVQLDIKPAGIPLDIICECLEPALKGRLQILARM DQEISAPRTQDHRNSPRLATLKFSNDALRRLIGPLGVLKRKIEEDTGARMSVSDETLTILAKNQTVLERVQEKIDFIIGREIEVGGIYKGIVSSIKEYGA FVEFNGGQQGLLHVSELSHEPVSKISDVISVGQQLSLMCIGQDVRGNIKLSLKATLPQLKSKKNNVTEEPVPVIKEAPKVWTSVGNLPNEQEEQKLTDAE LMLSRSTVKPSTSSNPGFLIRSAAECDEEDKTVSLNQGSKSNSKTLRATKRDRKRKTKVPESDDSDASIYSSGHSSHTVDRLNDEDAKVVSPLSAKSLKL GMKIAAKVYQIRALGLVLDLGNGVRGMYRFETNGKRDFEIGDELLVKCTSFSSKGLPVMSLVDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	0	1
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	1.41	0.8906
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	1.41	0.8997
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.008G052400 [exp]	4.47	0.8636
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	5.29	0.8377
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	5.29	0.8680
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	10.48	0.7923
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	10.58	0.8113	Pt-LON_ARA_ARA.2
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	12.00	0.8240
AT1G23280			MAK16 protein-related (.1)		Potri.012G085300 [exp]	12.24	0.8081
AT5G39900			Small GTP-binding protein (.1)		Potri.017G079800 [exp]	13.74	0.7936

Compare expression of checked genes

Potri.001G347900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.