Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40380 729 / 0 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70530 560 / 0 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G19090 510 / 2e-174 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G70520 481 / 4e-162 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT4G28670 389 / 5e-127 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G21410 327 / 2e-102 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23230 314 / 2e-99 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G05200 318 / 4e-99 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G11470 315 / 6e-98 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT4G23150 311 / 1e-96 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087000 [exp] 627 / 0 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043900 [exp] 563 / 0 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.010G043800 [exp] 489 / 2e-165 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 486 / 2e-164 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 424 / 4e-140 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.001G276600 [exp] 384 / 1e-124 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.017G141300 [exp] 379 / 9e-122 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 376 / 2e-121 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.004G025650 [exp] 330 / 8e-104 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029122 [exp] 524 / 5e-179 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 519 / 5e-177 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029123 [exp] 486 / 5e-164 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 474 / 2e-159 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 472 / 3e-159 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 460 / 6e-158 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10013039 [exp] 397 / 3e-130 AT1G70520 699 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10010960 [exp] 333 / 1e-105 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10018379 [exp] 317 / 1e-98 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018382 [exp] 317 / 2e-98 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G348000.1 pacid=42787876 polypeptide=Potri.001G348000.1.p locus=Potri.001G348000 ID=Potri.001G348000.1.v4.1 annot-version=v4.1 ATGATCTCCCTCCATCTTCCCCCAAAACTAATTACTATAAATCTTCAAAGCTGGCTCTTCTTGTCCCTCATCTACTCAGCCAGCTTCCTCTTCTCCCTCT CGCTCTCTGATCCTAGGATAACACAATCTGGTCTCTACTGTGGAAACTCAAAATATACCGTTCCTATCCCAACTTTTACTAAAGAGATGGGAACTCTCTC TCAACTACTAACCACCAGCCATTTTGCCACTAACAATCTCAACCACTCTTCTACTCTCACTTTTTATGCATTAGCCCAATGCCACCAAGATCTCTCCCAA ACCGACTGCCTTCTTTGCTATGCTGCTTCTCGCACCAAGCTCCCTCTCTGCCTCCCTTCCCTCTCCGGCCGCATCTATCTTGATGGCTGCTTCTTGCGTT ATGACAACTACAGCTTCTATCAAGAATCTGTTTCTTCTTCTTTTGATACCTTCAAGTGTGGTAATGAATATCTTGATGTTGACGACGACGACAAGCACCT CGATTTTCCTACACGGGTTGGCTATGCTGTTGGTAATGTAACGATTCAAGCTGTGGAGAATGGTGGGTTTGCAGTCGTCAACGTTGATGGCATTTACGCG TTGGCTCAGTGTTGGGATAGTGTTGGCAGAGAAGGGTGTAGAGGGTGCTTGGAGATGGCTGGGAAGGCGGCGAGAGGGTGCGTGCCCAAGAAGGAAGGGA GAGGAATGAATGCTGGTTGTTACTTGAGGTACTCGACCGACAAGTTTTACAACAATGGGGGAGGAGATGAAAGGAATGCTCGTGGTTTTTCTGGCCCAGG GATCGCCATTGCTGTAGTTTTAGCAACTGCCGCATGTCTCATGCTTTCCATCTTTGCAGCTTATGCCAGCTATGTAAGATTGTTGAAGGCAAAACGAGAA CGCAACAATCTCGGCAAGGTTCCATTCTCTTTCAACAAATCGAGTTTGAACTTCAAATATGAGATCTTGGAGAAGGCAACAGATTTTTTCAGTCCATCAA GGAAACTAGGCCAAGGAGGAGCTGGTTCTGTATTCATCGGGACTCTTCCAAATGGAGAAACTGTTGCTGTAAAGAGATTGATTTTCAACACCAGGCAATG GGTGGACGAGTTCTTCAATGAAGTCAATTTGATCAGTGGAATTCAGCACAAGAATCTCGTGAAGCTGCTGGGTTGCAGCATTGAAGGCCCTGAGAGTCTG CTGGTTTATGAGTATGTTCGGAACAAGAGCCTCGATCAGTTCCTTTTTGATAAGACTAAAAGTAGGACTTTAAATTGGAAGCAGCGTTTTGAAATAATTC TTGGAACAGCAGAAGGGCTTGCATATCTCCATGGGGGTTCTCAAGTGAGAATAATACACAGGGACATAAAAAGCAGCAATGTCCTTCTTGATGATAATCT CAATCCAAAGATTGCAGACTTTGGACTTGTTCGGTGTTTTGGTGCTGATAAATCGCATCTTAGCACTGGAATTGCAGGGACAATAGGCTACATGGCTCCT GAGTATCTCATCCGCGGACAACTCACCGATAAAGCAGATGTTTATAGTTTCGGAGTCCTGGTTCTTGAGATTTTAGGCGGCAAGAGGTGCAATGCCTTCG TGGAGAACTCTGGATCCCTCCTCCAAACAGTATGGAGGCTTTACAGATCAAACAGGTTGGTTGATGCTGTTGACCCTTGCCTCCGAGATGAATTTCCTAC ACGAGAGGCATCATGCGTGCTTCAAATTGGGCTGCTTTGCACCCAAGCTTCAGCAGCCTTAAGACCATCAATGGCACAAGTAGTTCATTTCTTGACCAAT AATGATTGCGAGATTCCTCCTCCAAATCAACCTCCTTATATGAATACTTCACTACTGGAGACTGAGAATTCCAGGTGGTCTTATAGCATAAACAGTTTGG TGTCAAATGGGCCAACAGAAGTTGAAGCTTCCTCCACTTCCATGGAGTCCTCAAGTATACTTAGTTCAAATGGCCAAATAAGAAGTGAGGAATCTAGTGC ATGA
AA sequence Show only first row Show all	>Potri.001G348000.1 pacid=42787876 polypeptide=Potri.001G348000.1.p locus=Potri.001G348000 ID=Potri.001G348000.1.v4.1 annot-version=v4.1 MISLHLPPKLITINLQSWLFLSLIYSASFLFSLSLSDPRITQSGLYCGNSKYTVPIPTFTKEMGTLSQLLTTSHFATNNLNHSSTLTFYALAQCHQDLSQ TDCLLCYAASRTKLPLCLPSLSGRIYLDGCFLRYDNYSFYQESVSSSFDTFKCGNEYLDVDDDDKHLDFPTRVGYAVGNVTIQAVENGGFAVVNVDGIYA LAQCWDSVGREGCRGCLEMAGKAARGCVPKKEGRGMNAGCYLRYSTDKFYNNGGGDERNARGFSGPGIAIAVVLATAACLMLSIFAAYASYVRLLKAKRE RNNLGKVPFSFNKSSLNFKYEILEKATDFFSPSRKLGQGGAGSVFIGTLPNGETVAVKRLIFNTRQWVDEFFNEVNLISGIQHKNLVKLLGCSIEGPESL LVYEYVRNKSLDQFLFDKTKSRTLNWKQRFEIILGTAEGLAYLHGGSQVRIIHRDIKSSNVLLDDNLNPKIADFGLVRCFGADKSHLSTGIAGTIGYMAP EYLIRGQLTDKADVYSFGVLVLEILGGKRCNAFVENSGSLLQTVWRLYRSNRLVDAVDPCLRDEFPTREASCVLQIGLLCTQASAALRPSMAQVVHFLTN NDCEIPPPNQPPYMNTSLLETENSRWSYSINSLVSNGPTEVEASSTSMESSSILSSNGQIRSEESSA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.001G348000 [exp]	0	1
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	6.63	0.9241
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	7.07	0.9315
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072816 [exp]	7.48	0.9102
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.014G155100 [exp]	8.36	0.9220
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	9.94	0.9299
AT2G44930			Plant protein of unknown funct...		Potri.012G012500 [exp]	10.58	0.9195
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.001G139600 [exp]	11.87	0.8822
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096100 [exp]	12.72	0.9142
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024140 [exp]	14.14	0.9138
					Potri.018G088701 [exp]	15.23	0.8954

Compare expression of checked genes

Potri.001G348000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.