Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16890 521 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G14860 491 / 2e-171 UDP-Glycosyltransferase superfamily protein (.1) AT1G10400 467 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 251 / 1e-77 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT3G53160 249 / 3e-77 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36780 237 / 1e-72 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 235 / 1e-71 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 234 / 2e-71 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 233 / 5e-71 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36750 227 / 1e-68 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272600 [exp] 298 / 2e-96 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G008900 [exp] 297 / 7e-96 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 289 / 1e-92 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G009000 [exp] 285 / 3e-91 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.005G036100 [exp] 280 / 8e-89 AT2G15490 309 / 3e-100 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G099032 [exp] 268 / 2e-84 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303700 [exp] 252 / 3e-78 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 252 / 3e-78 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 251 / 9e-78 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022220 [exp] 553 / 0 AT2G16890 497 / 4e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022222 [exp] 530 / 0 AT5G14860 505 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10022221 [exp] 494 / 2e-172 AT2G16890 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026927 [exp] 307 / 2e-99 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10020124 [exp] 298 / 5e-96 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10026926 [exp] 292 / 7e-94 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 233 / 5e-71 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10014082 [exp] 231 / 2e-70 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014086 [exp] 231 / 3e-70 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014437 [exp] 232 / 4e-70 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G348100.1 pacid=42791355 polypeptide=Potri.001G348100.1.p locus=Potri.001G348100 ID=Potri.001G348100.1.v4.1 annot-version=v4.1 ATGGACGCAAGTTCTAGTGATTCTAAGTATCACGTAGTTTTATTCCCTTTCATGTCAAAAGGCCACACTATCCCACTCCTCCACCTAGCCCGCCTGCTCC TCCGCCGTCCGAATTTCATCGTTACTGTGTTCACCACTTCTGGAAACCACAGTTTCATAGCTAATTCTCTTTCCGATACCACTGCCTTTATCATTGATCT ACCCTTCCCACAAAATGTCCCTCAAATCCCTGCCGGTGTTGAAAGCACCGATAAACTCCCTTCCATGTCTCTCTTTGCTCCATTTGCCCTTTCCACCAAG CTCATGCAACCCGACTTTGAAAAAGCTATCGAAACTCTTCCTCGCGTGAACTTCATGGTGTCGGACGGCTTCTTATGGTGGACTTTAGATTCTGCAATCA AGTTCGGTTTTCCAAGATTGGTTTCTTTTGGCATGTCCATTTACTCCTCATGTCTGAGCAAAGCTGTGGTTGAGCAAAGACTTCTGTTTGGTCCTGAGTC AGATGATGAGCTAATCACACTGCCTCAGTTTCCATGGATTAAAGTCACTAGAAATGATTTTGGTTCAACTTTTAGGGACTCTGAACCAAGCGGTCCTCAC TTTGAGTTCAACATAGCGACAATCACAGCAGCAATTAACAGTTACGGTACCATCATTAATAGCTTCTACGAGCTCGAGGCAACGTTCGCTGATTACTGGA ACAAAGAGAATGGAAACAAGACCTGGTTTGTTGGACCCCTATGTCTGGCTGATGCACCACGGGTAGAACATGAACCGCGCAAGAAACCCACTTGGATTAA GTGGCTAGATCAAAAGCTAGAGCAAGGAAGGTCAGTCCTATATGTAGCGTTTGGGTCTCAGGCAGATATCTCAGCACAACAACTCAAAGAAATAGCTATT GGGTTAAAGAAGTCCAAGGTAAATTTCTTGTGGGTGATGAGAGCCAAAGATCCAGAATATGGTGATGAGTCTGAACTCGAAGAGGGGATCGGGGATAGAG GAATTATATTGAGAGAGTGGGTAGATCAAAGAGAGATATTGATACACCAAAGTGTGAATGGCTTTCTGAGTCACTGTGGATGGAACTCGGTGCTGGAAAG CATATGTGCAGGAGTGCCGATTCTAGCATGGCCCATGATGGCTGAGCAGCCTTTGAATGCACGAATGGTAGTGGAGGAGATAAAAGTAGGGTTGAGAGTA GAGACATGTAATGGATCGGTGAGAGGATTTGTGAAGTGGGAGGGTTTAAAGAAGATGGTAAAGGAGTTGATGGAAGGTGAGACAGGTAAACAGGTGAGGA AGAATGCGGAGGAGTACGGGGAGATTGCCAAAAAAGCTATGGAGGAGGGAAGTGGATCTTCCTGGTGCAATTTAGACGTGTTGGTGGATGGCTTGTGCAA TCCAAGGAATACGTGA
AA sequence Show only first row Show all	>Potri.001G348100.1 pacid=42791355 polypeptide=Potri.001G348100.1.p locus=Potri.001G348100 ID=Potri.001G348100.1.v4.1 annot-version=v4.1 MDASSSDSKYHVVLFPFMSKGHTIPLLHLARLLLRRPNFIVTVFTTSGNHSFIANSLSDTTAFIIDLPFPQNVPQIPAGVESTDKLPSMSLFAPFALSTK LMQPDFEKAIETLPRVNFMVSDGFLWWTLDSAIKFGFPRLVSFGMSIYSSCLSKAVVEQRLLFGPESDDELITLPQFPWIKVTRNDFGSTFRDSEPSGPH FEFNIATITAAINSYGTIINSFYELEATFADYWNKENGNKTWFVGPLCLADAPRVEHEPRKKPTWIKWLDQKLEQGRSVLYVAFGSQADISAQQLKEIAI GLKKSKVNFLWVMRAKDPEYGDESELEEGIGDRGIILREWVDQREILIHQSVNGFLSHCGWNSVLESICAGVPILAWPMMAEQPLNARMVVEEIKVGLRV ETCNGSVRGFVKWEGLKKMVKELMEGETGKQVRKNAEEYGEIAKKAMEEGSGSSWCNLDVLVDGLCNPRNT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	0	1
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	1.00	0.9853
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043500 [exp]	1.41	0.9664
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	2.64	0.9528
					Potri.005G059900 [exp]	3.31	0.9419
AT1G34300			lectin protein kinase family p...		Potri.013G115800 [exp]	3.46	0.9578
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	3.87	0.9617
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.001G011500 [exp]	5.65	0.9522	PRX1.12
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G060100 [exp]	7.74	0.9288
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.003G131300 [exp]	7.74	0.9575
					Potri.017G111225 [exp]	8.36	0.9509

Compare expression of checked genes

Potri.001G348100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.