Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27730 1542 / 0 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT5G61140 309 / 4e-86 U5 small nuclear ribonucleoprotein helicase (.1.2) AT2G42270 295 / 2e-81 U5 small nuclear ribonucleoprotein helicase (.1) AT1G20960 289 / 1e-79 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT4G32700 127 / 3e-29 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT1G59760 101 / 2e-21 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 77 / 7e-14 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 66 / 2e-10 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT2G06990 66 / 2e-10 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G16840 45 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056501 [exp] 312 / 3e-87 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.015G095500 [exp] 287 / 5e-79 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 281 / 3e-77 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.018G036600 [exp] 120 / 4e-27 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.018G146001 [exp] 82 / 9e-16 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 82 / 2e-15 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 69 / 2e-11 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 68 / 4e-11 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 63 / 1e-09 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014551 [exp] 1490 / 0 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10032137 [exp] 1445 / 0 AT3G27730 1291 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10025168 [exp] 297 / 4e-82 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 296 / 6e-82 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 281 / 6e-77 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10042628 [exp] 242 / 2e-67 AT1G20960 921 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10022115 [exp] 125 / 2e-28 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10022082 [exp] 91 / 3e-18 AT1G20960 379 / 2e-114 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10027599 [exp] 77 / 7e-14 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 76 / 1e-13 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF02889 [poplar] [flax] Sec63 Sec63 Brl domain
Representative CDS sequence Show only first row Show all	>Potri.001G348200.2 pacid=42791869 polypeptide=Potri.001G348200.2.p locus=Potri.001G348200 ID=Potri.001G348200.2.v4.1 annot-version=v4.1 ATGGATTCGTATACGCTCAAGTCCGTGTCAGATCTGCCACCGCCCTTTCGTTCGATTTTTAGCTTCAGGTATTTTAATTCATTGCAAATTGAATGTTTCC CTGTCTGCTACCATTCAGATGTAAACATGGTGATCTCAGCACCAACCGGTAGTGGTAAAACAGTGCTCTTTGAACTGTGCATACTGAGGCTTCTGTCAAG GTTTATCTCTGAAGGGAGGTTTGTGCATGTCAAAGGAATGCTAAAAACAATCTACATAGCCCCATCTAAGGCTTTAGTTCAAGAAAAACTCCGTGATTGG ACTCAGAAGTTTGGATCACTGGGGATAAATTGCCTGGAGCTGACTGGTGACAATGAATTCTACAACACAAGGACTATACAAGAAGCAGACATTATTCTAA CTACTCCTGAGAAATTTGATTCTGTCACTCGGTATCGCATAAAGGATGGTGGCTTGAGCTTTTTCAGTGACATTGGCCTGCTTCTTATTGATGAAGTTCA CCTACTGAATGATCCTCGTGGAGCTGCTTTAGAGGCAATTGTTAGTAGAATAAAGATGCTTGCTCACAATCCTGAAATGAAATCAAGTCCTCTATCTTGT GTTCGTTTTTTAGCAGTTTCAGCAACAATTCCAAATATCGAGGATCTTGCTGAGTGGCTTAATGTTCCAGTCCAAGGTATTAAAAGGTTTGGAGAAGAAA TGAGGCCTGTAAAGTTGACAACCAAAGTTTTTGGCTATGCTCCCGCAAAAAATGATTTTCTATTTGAAAAGCGCCTTCAAAACTATATTTTTGATATTCT GATGCACTATTCAAGAGGGAAATCTGCTCTAGTATTTTGCTCGACAAGGAAAGGGGCACAGGAAGCAGCATTGAAACTATCTCAGACAGCAATGACCTTT GGTTATTCGAATCCTTTCATTAAAGACAAAGAACAGCAGGAAAGGCTAAGGGAAGCTTCACTTTCATGCAGCGACAAACAACTGCAGTCTTATATCCTAT ATGGTGTTGGTTATCACAATGGTGGGCTTTGCCTGAAAGATCGGAGCCTTATTGAGGGTCTGTTTCTTAAGGGTGATATTAAAATTCTGTGCACCACTAA CACCCTTGCTCATGGAATCAACTTACCAGCACATACAGTAGTCATAAAATCAACACAACACTTCAACAAGGAAAAAGGTCTTTATATGGAATATGATCGT TCCATGATACAACAGATGTGTGGGAGGGCAGGTCGGCCACCATTTGATGATACAGGGATGGTTATAATCATGACAAGAAGAGAAACAGTTCATTTGTATG AAAATCTCTTGAGTGGATGTGAAATGGTGGAATCACAATTGCTTTCATGTGTGACAGAGCACTTGACTGCAGAGATAGTACAGTTGACTGTTTCTGATAT TGCACGGGCAATTGAATGGATGAAGTGCTCGTACTTGTACGTTAGGATAAAAAAGAACCCTGAGCACTATGCTGTTAAGAAAGGAATTTCTAGAGACCGC ATAGAAAAGCAAATGCAAGAGATTACTGTTCAGAAAGTTAACGAGTTATCACACCACCAAATGATCTGGACTGACAAAGATGGTTTTCTACTGAAGCCAC TAGAGCCCGGACGGTTGATGACCAGGTATTATTTGAAATTCAACACAATGAAGCATGTCATGCAGACCCCGGAAAACTGCAGCTTGGAAGATGCACTTAA TGTTATATGCCATGCCGAGGAAATTGCATGGATACAACTTAGACGCAATGAGAAAAAGCTTCTGAATGATATCAACATTGATAAAGATTGTCGAATTCGG TTTCACATCAATGGGGATAAGCAGAAACGGAAAAAGCGTATTCAAACTAGAGAGGAGAAGATATTTGTTTTGGCAAATGACTGCTTGACTGGGGATCCTT CTGTTCATGATTTATCCCTAACCCAGGACATGAATTCTATAAGTTCGAATGGGTGTAGAATTGCTAAGTGCATGAAAGAGTACTTTATTTTCAAAAGGAA TTACAAAGGAGCCATCAACTCAACCCTTCTAGCAAAATCATTGTATCAGAAACTCTGGGATGATAGTCCATACTTGCTGAAGCAATTACCTGGCATTGGA ATGGTGACTGCTAAGGCTCTACATTCAATGGGAATTAAATCATTTGACACGCTAGCTGAAGCTGATCCAAGGAGAATAGAGATTCTCACTGGCCGTAAAT TCCCCTTTGGGAACCACATCAAGGACTCTCTCCTATCATTACCTCCGAAAGTCAATATGAGTATTGAGGAAAATGAGTGCCATAGGCGAGGCATGTCTAA GTTTGTTGTGACATTGACTAGGCTATCACAACCACTCCAGTCATCTAAACGACATTATGCTGATATGATTGTCGGTACAGAAGAAGATAACCTGATTCAC TTTCATGAGAAAATAAGAGTGGATGAGTTCTCAAGCCCCTATAGTGCAACAATTCTCCTGTCAATCCCGCAACAGAAAAAGCTGACTTTGAAGGCTAATC TTATTTTTGAAGAATACATTGGTCTTGATTTCCACCAAAAACTTCTATTGATGAAGGAAAGCAATCCAGAAACAAACAAAAACAGATGCAAGCAGCCTTC CCTGTTTCCTCCACCTGGGGATGTTTGTGTCATAGAAGACGAAAGTGAAACGACATCTTATGGTCCAGCTGAAATGCTTTGCAATTTGACAAAATCTAAA ACAATAAACAATTCAATGCCAAGTTTCAAACTCATTGATGAGGATTTGGAATTGGGAGTTGAAGGCGAGCCTGGTTTTGAAATCCAAGATGACAGTTGTA AAATCATATCTGAACAAACGATATTTGAGCACATACGTGAAAAGGCCAAGAACTTCCCTCTCTTGACTTCTTCAAGCAATGTTTGTTCTCCATCATCAGA GGCCATGCTCCTCACAAGAAAACGTTCCCGTGACAAGGCCATTGAACTTGATAGTGCACCGAATGCTACGGAAGAGACAGAAGGAAGCAAAATCTCACTA GCTTTGCTCAATGTGACTTCAGAACAAGGAGAGAGAGAACGGTATGGACATGATAGCTACAAGCTTATGACTCCGAAGCATCACACCAGCCCCGGAAGGT TTGTTGCAGACCTTGTGGATGATTCAGCAGGTGGGCTTCCTTCTAAATCTGAAACAAGTGGGCTCAATGGTCCAACACAAGATACAATATTTGATCACAT AAGGAAAAAAGCCCAGTATTTTCCAGCGTTGTCAAGAACCATGCAGTTTGACTCTGTAGCTGGGACAAAGGAATACTCTTTTGAGAATCAACCTGACATT TGCATTGCTGCTTCGCAAGTTTTGAAAGAGGTGAATACTGATAGATCTACCGGAGATACCATAATCATTTCAGATTCGGAAACCAGGAGAGGCATAGATG CATCCAGTACAGAGGCAGGATCAAGGGTTAAAGATGATAAATTTTCTCGGAGTCCCCATGGAGAGCGCGGAAGTTCGAGCGCTCCTCCGAGAGTCTCATG CATCAACACTGATCCGTCTTCTATCGAAATGTTACCTTTCGACATTTCTATGATAAAACATAATACGCGGCTAGCAGGCTCAAGAAACTCCACGGCGTAT GGCAGGAAGAAGCAGTCTTCTCCAAACGGATCCAAAAGACACTGCTGCTCATTGGAAATGGCTGGTAAAAATAGGGAAGTGGACTCATTTCTTGGGTTTA CGAGTGTCTTTTCATTTCTCTGA
AA sequence Show only first row Show all	>Potri.001G348200.2 pacid=42791869 polypeptide=Potri.001G348200.2.p locus=Potri.001G348200 ID=Potri.001G348200.2.v4.1 annot-version=v4.1 MDSYTLKSVSDLPPPFRSIFSFRYFNSLQIECFPVCYHSDVNMVISAPTGSGKTVLFELCILRLLSRFISEGRFVHVKGMLKTIYIAPSKALVQEKLRDW TQKFGSLGINCLELTGDNEFYNTRTIQEADIILTTPEKFDSVTRYRIKDGGLSFFSDIGLLLIDEVHLLNDPRGAALEAIVSRIKMLAHNPEMKSSPLSC VRFLAVSATIPNIEDLAEWLNVPVQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMHYSRGKSALVFCSTRKGAQEAALKLSQTAMTF GYSNPFIKDKEQQERLREASLSCSDKQLQSYILYGVGYHNGGLCLKDRSLIEGLFLKGDIKILCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDR SMIQQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLSGCEMVESQLLSCVTEHLTAEIVQLTVSDIARAIEWMKCSYLYVRIKKNPEHYAVKKGISRDR IEKQMQEITVQKVNELSHHQMIWTDKDGFLLKPLEPGRLMTRYYLKFNTMKHVMQTPENCSLEDALNVICHAEEIAWIQLRRNEKKLLNDINIDKDCRIR FHINGDKQKRKKRIQTREEKIFVLANDCLTGDPSVHDLSLTQDMNSISSNGCRIAKCMKEYFIFKRNYKGAINSTLLAKSLYQKLWDDSPYLLKQLPGIG MVTAKALHSMGIKSFDTLAEADPRRIEILTGRKFPFGNHIKDSLLSLPPKVNMSIEENECHRRGMSKFVVTLTRLSQPLQSSKRHYADMIVGTEEDNLIH FHEKIRVDEFSSPYSATILLSIPQQKKLTLKANLIFEEYIGLDFHQKLLLMKESNPETNKNRCKQPSLFPPPGDVCVIEDESETTSYGPAEMLCNLTKSK TINNSMPSFKLIDEDLELGVEGEPGFEIQDDSCKIISEQTIFEHIREKAKNFPLLTSSSNVCSPSSEAMLLTRKRSRDKAIELDSAPNATEETEGSKISL ALLNVTSEQGERERYGHDSYKLMTPKHHTSPGRFVADLVDDSAGGLPSKSETSGLNGPTQDTIFDHIRKKAQYFPALSRTMQFDSVAGTKEYSFENQPDI CIAASQVLKEVNTDRSTGDTIIISDSETRRGIDASSTEAGSRVKDDKFSRSPHGERGSSSAPPRVSCINTDPSSIEMLPFDISMIKHNTRLAGSRNSTAY GRKKQSSPNGSKRHCCSLEMAGKNREVDSFLGFTSVFSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Potri.001G348200 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Potri.002G161300 [exp]	13.07	0.7024
AT3G11770			Polynucleotidyl transferase, r...		Potri.019G021900 [exp]	24.65	0.6371
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.012G032100 [exp]	27.64	0.6582
AT4G38040			Exostosin family protein (.1)		Potri.012G091600 [exp]	61.44	0.5853
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	63.49	0.6238
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	73.60	0.5998
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Potri.005G224500 [exp]	81.70	0.5783	ATTIM44.2
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.018G125900 [exp]	95.36	0.5680
AT1G04645			Plant self-incompatibility pro...		Potri.018G148630 [exp]	95.81	0.5680
					Potri.012G028432 [exp]	100.99	0.5754

Compare expression of checked genes

Potri.001G348200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.