Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14550 509 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G11940 340 / 6e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G62305 335 / 5e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G57270 187 / 1e-55 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G31350 186 / 2e-55 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 187 / 3e-55 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 185 / 2e-54 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 185 / 2e-54 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 182 / 2e-53 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G19160 181 / 5e-53 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009500 [exp] 347 / 9e-118 AT1G62305 428 / 7e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.002G227000 [exp] 303 / 4e-100 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 190 / 8e-57 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 186 / 3e-55 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 186 / 5e-55 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 186 / 5e-55 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 184 / 2e-54 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 184 / 2e-54 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 180 / 2e-52 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008770 [exp] 545 / 0 AT5G14550 558 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10022242 [exp] 543 / 0 AT5G14550 554 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10035297 [exp] 331 / 3e-111 AT1G11940 371 / 4e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020037 [exp] 324 / 9e-109 AT1G11940 442 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10015553 [exp] 323 / 4e-108 AT1G11940 437 / 9e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030027 [exp] 319 / 7e-107 AT1G11940 369 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025464 [exp] 192 / 2e-57 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 187 / 2e-55 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10005505 [exp] 183 / 7e-54 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 183 / 7e-54 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G348400.2 pacid=42788900 polypeptide=Potri.001G348400.2.p locus=Potri.001G348400 ID=Potri.001G348400.2.v4.1 annot-version=v4.1 ATGAAGCAGAGAAAAGCGACGCATCAGAAATCTGTTTACAATTATAATAAATGGAAGAAGAGGAAGATATTTGTGATGCTATCATTGTTATTATTGCTAG GATTTTGCCTTGTTTTGACTCATAATTCTACTACTACAAATACAACAACAAGTAGAATCCTGACGCTCGCATCTTTGCGCTCTCATTTCATTGTTCAAAA GCCTAAAATTGCCTTTCTCTTTATAGCTCGAAATCGTCTACCTCTTGATATGCTTTGGGATGCTTTCTTTAAGGGTCAGGAATCTAGATTTTCCATTTTC GTTCACTCTAGGCCTGGGTTTCTGTTCAACAAGGCAAATACGAGATCTGAATATTTCTTAAATCGTCAAGTTAATGACAGTATACAGGTGGATTGGGGGG GAGCATCGATGATCGAGGCTGAGCGCATATTGCTTAGACATGCACTTGTGGATCCACTGAATGAACGCTTTGTTTTTCTTTCAGACAGCTGCATACCTCT CTACAACTTCAGCTACACATACGACTATATTATGTCCACATCAACTAGTTTTGTAGACAGCTTTGCTGATACAAAAGAAGGTCGCTACAATCCGAAAATG GCTCCACTTGTTCCTGTTTATAACTGGAGGAAAGGATCTCAGTGGGTGGTTCTGACCAGAAAGCATGCAGAAGTAGTAGTGAATGACACTACTGTCTTTC CTATGTTTCAACAGCATTGCAAGCGAAGATCACTACCTGAGTTTTGGCGGGATCACCCCATTCCAGCTGATACATCCATGGAGCATAATTGCATTCCTGA TGAACATTATGTCCAGACATTACTGGCTCGAGAGGGCCTTGAAGGAGAAATAACACGAAGATCACTGACACATAGTTCATGGGATCTTTCATCTTCTAAA GACCCTGAACGCCGTGGATGGCATCCTGTTACCTATAAGTTTTCTGATGCTACTCCCACGCTTATACAATCTATTAAGGATATTGACAATATTTATTATG AGACGGAGTACCGAAGAGAATGGTGCAGCAGCAAAGGGAAACCATCCAGGTGTTTTCTTTTTGCTAGAAAATTCACTCGTCCAGCTGCTTTCCGCCTTCT TAATATGTCTGTGCTGGGAGCTTTCCGTAAAGCAACAAATAAGTCATGA
AA sequence Show only first row Show all	>Potri.001G348400.2 pacid=42788900 polypeptide=Potri.001G348400.2.p locus=Potri.001G348400 ID=Potri.001G348400.2.v4.1 annot-version=v4.1 MKQRKATHQKSVYNYNKWKKRKIFVMLSLLLLLGFCLVLTHNSTTTNTTTSRILTLASLRSHFIVQKPKIAFLFIARNRLPLDMLWDAFFKGQESRFSIF VHSRPGFLFNKANTRSEYFLNRQVNDSIQVDWGGASMIEAERILLRHALVDPLNERFVFLSDSCIPLYNFSYTYDYIMSTSTSFVDSFADTKEGRYNPKM APLVPVYNWRKGSQWVVLTRKHAEVVVNDTTVFPMFQQHCKRRSLPEFWRDHPIPADTSMEHNCIPDEHYVQTLLAREGLEGEITRRSLTHSSWDLSSSK DPERRGWHPVTYKFSDATPTLIQSIKDIDNIYYETEYRREWCSSKGKPSRCFLFARKFTRPAAFRLLNMSVLGAFRKATNKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	0	1
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.013G155300 [exp]	2.00	0.9560
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	3.74	0.9473
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	4.47	0.9384
AT3G10700		GalAK	galacturonic acid kinase (.1)		Potri.006G070500 [exp]	8.71	0.9419
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	9.48	0.9451	UXS1.1
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	11.22	0.9235
AT3G13130			unknown protein		Potri.001G366500 [exp]	12.24	0.9168
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.004G118600 [exp]	13.41	0.9347
AT4G27270			Quinone reductase family prote...		Potri.004G028900 [exp]	16.09	0.9083
AT1G73140		TBL31	Plant protein of unknown funct...		Potri.001G376700 [exp]	16.49	0.9307

Compare expression of checked genes

Potri.001G348400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.