Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14540 184 / 2e-51 Protein of unknown function (DUF1421) (.1) AT3G01560 181 / 3e-50 Protein of unknown function (DUF1421) (.1) AT4G28300 81 / 6e-16 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125008 [exp] 130 / 3e-32 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 127 / 4e-31 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.019G095400 [exp] 81 / 4e-16 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 76 / 2e-14 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032138 [exp] 225 / 6e-66 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 216 / 7e-63 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1) Lus10018089 [exp] 93 / 7e-20 AT5G14540 91 / 4e-19 Protein of unknown function (DUF1421) (.1) Lus10033692 [exp] 84 / 1e-16 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 82 / 3e-16 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10042086 [exp] 80 / 2e-15 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1) Lus10018593 [exp] 79 / 4e-15 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10039827 [exp] 78 / 5e-15 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF07223 [poplar] [flax] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Potri.001G348500.1 pacid=42792391 polypeptide=Potri.001G348500.1.p locus=Potri.001G348500 ID=Potri.001G348500.1.v4.1 annot-version=v4.1 ATGAATTCTTCGCAGTTTATGGACAAACAAATAATGGATTTGACTTCTTCATCATCAACAACACAATCGCTGGCCCTGAGTTCTTCTCCAAAAATAATCA ATAGCAGCAGCAAAGACTTCATTGATCTAATGAATCATCCTCCACCTCCTCCTCCACAAGATGATTCACAATCTCATATTAATAATAATGATCTCGATGA TGGAATTAAGAGGGAAGAGATCGTTGCTAGCTATGATTTCCAGCCTATTCGCCCTGTCTTCGATCCCGCCGCCGCTGATTCTAACTCTATTTCCTCATCC GCCTCTCCTCTCAGAAATTATGGTTCTCTGGACTCAATGGAACCAGCGAAAGTCGTTATGGAAAAGGATCGGAGTGTTTTTGATGCTGCTTCGATTATAT CTGAAATTGATAGAACAATGAACAAGTTCTCTGATAATTTGCTGCATGCTTTAGAAGGTGTTAGTGCTCGACTAACACAGTTGGAGAGCAGAACCAGACA CCTCGAGAATTCTGTAGATGATTTGAAACTGTCTGTTGGGAACAATCATGAGAGCACTCAAGGGAATATGAGACACCTCCACAACATTCTCAGGGAGGTG CAAACAGGTGTACAGGTTTTAAAGGACAAGCAGGAAATGTTGGAGTCTCAGCTGCAGCTCACTAAGTTGCAAGTGTCGAAGGCAGATCAGCAACAATTGG AAACTCAATCCACTGGGCAAATGGATGCAGCGCAGCAAGGAGCATCTGCTCCTCAATCTCACCAACTTCCTCCCCTCACTTTTCCTCAATCAGTCCCTTC TGTCTCTTTTCCTCCTTCTGTCCCTCCTCCTATTCCCCAGCAGAATATGTTACCTCCAGCTCCACTTTCAAATCAGTTTCCACAGAACCAGATTCCTCCT GTCCCTCAGCAAGACCCTTACTATTCTCCACCTGGTCAACCTCAAGAACCACCAAATCCCCAATATCAGGTACCATCGTCCCAGCAGCTGCAGCCTTCTC CTGCAGCACCACCAAACCAACCATATCATGCACCTCAACCACAGTATTCCCAGCCACCTCAGCCTCATCAACCTCAACCTCCACTTGCTCGCCATCCTGA AGAGACTCCTTTCATCCCCCATCAGAGCTACCCACCCAGCCTTCGCCCGCTATCTACTCAGCCACCAAGTGGGGCTCCTCCTCAGCCATATTATGGATCT CCTTCCAATATGTATGAACCACCAACTAGTAGACCCAGTTCAGGGTTTTCTGCTGGATACGGGCCACCTTCTGGGTCTACTGAACCATATCCTTATGGTG GATCACCTTCTCAGTATGGTATCAGCCCCACAATGAAACAGCAGCAACCTGTCATGTCTCAGAGTGGTGGAAGTGGATTTCCCCAGCTTCCAACTGCTCG GATATTACCACAGGCATTGCCTACCGCTTCTGGGATTGGTAGTGGGCCAGGCTCTTCTGGAACTGGGAACAGGGTTCCCCTTGATGACGTGGTTGACAAA GTGACGAGCATGGGATTTCCAAGGGAACATGTCGAAGCTACAGTGCGAAAGCTGACAGAGAATGGCCAGTCAGTTGACCTGAATATAGTATTGGATAAGC TTATGAATGATGGAGATGTGCAGCCCCAGAGAGGCTGGTTTGGCCGGTAG
AA sequence Show only first row Show all	>Potri.001G348500.1 pacid=42792391 polypeptide=Potri.001G348500.1.p locus=Potri.001G348500 ID=Potri.001G348500.1.v4.1 annot-version=v4.1 MNSSQFMDKQIMDLTSSSSTTQSLALSSSPKIINSSSKDFIDLMNHPPPPPPQDDSQSHINNNDLDDGIKREEIVASYDFQPIRPVFDPAAADSNSISSS ASPLRNYGSLDSMEPAKVVMEKDRSVFDAASIISEIDRTMNKFSDNLLHALEGVSARLTQLESRTRHLENSVDDLKLSVGNNHESTQGNMRHLHNILREV QTGVQVLKDKQEMLESQLQLTKLQVSKADQQQLETQSTGQMDAAQQGASAPQSHQLPPLTFPQSVPSVSFPPSVPPPIPQQNMLPPAPLSNQFPQNQIPP VPQQDPYYSPPGQPQEPPNPQYQVPSSQQLQPSPAAPPNQPYHAPQPQYSQPPQPHQPQPPLARHPEETPFIPHQSYPPSLRPLSTQPPSGAPPQPYYGS PSNMYEPPTSRPSSGFSAGYGPPSGSTEPYPYGGSPSQYGISPTMKQQQPVMSQSGGSGFPQLPTARILPQALPTASGIGSGPGSSGTGNRVPLDDVVDK VTSMGFPREHVEATVRKLTENGQSVDLNIVLDKLMNDGDVQPQRGWFGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Potri.009G019800 [exp]	2.00	0.7903
AT1G54215			proline-rich family protein (....		Potri.003G064900 [exp]	2.23	0.8188
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.010G022500 [exp]	3.00	0.7575
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	3.46	0.7846
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	5.47	0.7642
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	6.00	0.7460
AT5G05380		PRA1.B3	prenylated RAB acceptor 1.B3 (...		Potri.019G124100 [exp]	9.48	0.7558
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	9.53	0.7443
AT5G13890			Family of unknown function (DU...		Potri.002G237200 [exp]	10.09	0.7223
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	10.24	0.7382

Compare expression of checked genes

Potri.001G348500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.