Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14760 996 / 0 AO L-aspartate oxidase (.1) AT5G66760 255 / 7e-76 SDH1-1 succinate dehydrogenase 1-1 (.1) AT2G18450 253 / 4e-75 SDH1-2 succinate dehydrogenase 1-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026400 [exp] 248 / 2e-73 AT5G66760 1180 / 0.0 succinate dehydrogenase 1-1 (.1) Potri.005G123900 [exp] 246 / 2e-72 AT5G66760 1136 / 0.0 succinate dehydrogenase 1-1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014539 [exp] 1095 / 0 AT5G14760 994 / 0.0 L-aspartate oxidase (.1) Lus10041739 [exp] 253 / 3e-75 AT5G66760 1153 / 0.0 succinate dehydrogenase 1-1 (.1) Lus10024015 [exp] 234 / 9e-68 AT5G66760 1103 / 0.0 succinate dehydrogenase 1-1 (.1) Lus10018901 [exp] 100 / 3e-25 AT5G14760 95 / 2e-24 L-aspartate oxidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00890 [poplar] [flax] FAD_binding_2 FAD binding domain CL0063 [poplar] [flax] PF02910 [poplar] [flax] Succ_DH_flav_C Fumarate reductase flavoprotein C-term
Representative CDS sequence Show only first row Show all	>Potri.001G348600.6 pacid=42788839 polypeptide=Potri.001G348600.6.p locus=Potri.001G348600 ID=Potri.001G348600.6.v4.1 annot-version=v4.1 ATGACAACGAGTATAGCTGGTGGAAGCAGCAACCTCCACTACCGGTTAAGTTTCCGCCAGGCTAAAGGTTGTAGACAATCTTCTTGGATTTCCAGTTTGA CATTCAATGGATGCTTGCGGAATGAGATTTCATGGTCGGATGGGCTATCAAAGTTGTTGCAGTTCCAGAGATATAAATTTTCCCGATCTACCATTAGCAA AAACTGGAAACCTCTTGGAACAAGAAAAGTAAGTGTATCATCTTGCTTGAGAGATAGTACAGTTAAGTACTTTGATTTTGCTGTCATTGGAAGTGGAGTT GCTGGTCTGCGCTATGCTCTTGAAGTTGCAAAATATGGAACTGTTGCAGTCATTACCAAGGCTGAGCCCCATGAGAGCAATACAAACTATGCCCAAGGTG GTGTTAGTGCAGTGCTGTCCCCATCAGACTCTGTGGAGAGTCACATGCAGGATACTATGGTAGCAGGTGCTTATCTATGTGATGAGGAGACTGTCAGAGT TGTCTGCACAGAAGGACCTGACAGAATTAGAGAATTGATAGCTATGGGTGCAATGTTTGATCATGGGGAGGATGGAAACTTGCACCTAGCAAGGGAAGGG GGTCACTCTCACCATAGAATTGTTCATGCTGCTGATATGACCGGAAGGGAGATTGAGCGAGCTCTGCTGGAGGCCGTTGTCAATGATCCTAATATCTCTG TGTTTGAGCACCATTTTGCCATAGATTTGCTAACTTCTCAGGATGGTCCTGACATGGTTTGTCATGGTGTGGACACTTTGAACACTGAAACTCAACAGGT GGTTCGATTTATTTCAAAGGTGACTTTACTTGCATCAGGTGGGGCTGGGCATATCTACCCATCCACCACAAATCCTCCGGTGGCAACAGGAGATGGAATG GCTATGGCTCACCGAGCTCAAGCTGTGATTTCCAACATGGAATTTGTGCAGTTCCACCCAACTGCTTTAGCTGATGAAGGGCTTCCCATAAAACCAATCA AAGCTCGAGAAAACGCATTTCTCATCACTGAAGCTGTAAGGGGCGATGGAGGCATCCTCTATAACTTAGACTGGGAAAGATTCATGCCCCTGTATGATGA GAGAGCTGAGCTAGCTCCTAGGGATGTAGTGGCGAGGAGCATAGATGACCAGCTTAAGAAGCGTTGTGAGAAGTATGTGCTACTTGATATTAGTCACAAG CCTAGAGAGAAGATTCTCTCTCACTTCCCCAACATAGCTGCTGAGTGCCTCCAGTATGGCCTGGATATAACCCGCCAACCAATTCCTGTGGTTCCTGCTG CCCATTACATGTGCGGTGGAGTCCGTGCTGGGCTTCAGGGGGAGACAAATGTGCAGGGCCTCTATGTGGCAGGTGAGGTTGCATGCACTGGTTTGCACGG AGCAAACCGACTCGCTAGCAATTCATTGCTGGAAGCACTAGTTTTTGCTCGAAGAGCTGTTCAGCCATCAATTGATCACATGAAGAGCTCTAGCCTTGAT CTCAGTGCTTCAAATTGGTGGGCCAGACCAGTAGTACCCAATTCACCTGGGAGCAATGTAATGGACAACGTATCGAGGAAGACAAGGGAAGTGAGGAGAG AGTTGCAGTCAATCATGTGGAAGTACGTAGGGATTGTCCGGTCAACAACAAGGCTTGAAACCGCGGAGGGAGAAATCAGTGAGTTAGAGGCCCAGTGGGA GAAGTACTTATTCGAGGAAGGATGGGAGCAGACAATGGTGGGGCTTGAGGCTTGTGAAATGAGAAACCTCTTTTGTTGTGCAAAGCTGGTAGTGAGCAGT GCACTCGCTAGGCATGAAAGCCGTGGGCTGCACTATACGATTGATTTTCCTCATGTGGAGGAAAGTAAGAGGCTACCAACAGTTATTCTTCCATCTCTTG TGAATAATAATACATGGAGCTCACGACAGCTACACAAGCAGGTCATTTTTTAG
AA sequence Show only first row Show all	>Potri.001G348600.6 pacid=42788839 polypeptide=Potri.001G348600.6.p locus=Potri.001G348600 ID=Potri.001G348600.6.v4.1 annot-version=v4.1 MTTSIAGGSSNLHYRLSFRQAKGCRQSSWISSLTFNGCLRNEISWSDGLSKLLQFQRYKFSRSTISKNWKPLGTRKVSVSSCLRDSTVKYFDFAVIGSGV AGLRYALEVAKYGTVAVITKAEPHESNTNYAQGGVSAVLSPSDSVESHMQDTMVAGAYLCDEETVRVVCTEGPDRIRELIAMGAMFDHGEDGNLHLAREG GHSHHRIVHAADMTGREIERALLEAVVNDPNISVFEHHFAIDLLTSQDGPDMVCHGVDTLNTETQQVVRFISKVTLLASGGAGHIYPSTTNPPVATGDGM AMAHRAQAVISNMEFVQFHPTALADEGLPIKPIKARENAFLITEAVRGDGGILYNLDWERFMPLYDERAELAPRDVVARSIDDQLKKRCEKYVLLDISHK PREKILSHFPNIAAECLQYGLDITRQPIPVVPAAHYMCGGVRAGLQGETNVQGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHMKSSSLD LSASNWWARPVVPNSPGSNVMDNVSRKTREVRRELQSIMWKYVGIVRSTTRLETAEGEISELEAQWEKYLFEEGWEQTMVGLEACEMRNLFCCAKLVVSS ALARHESRGLHYTIDFPHVEESKRLPTVILPSLVNNNTWSSRQLHKQVIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14760		AO	L-aspartate oxidase (.1)		Potri.001G348600 [exp]	0	1
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	7.74	0.7875
AT3G24170		ATGR1	glutathione-disulfide reductas...		Potri.003G178200 [exp]	11.66	0.7897	GR.1
AT2G17640		SAT-106, AtSera...	SERINE ACETYLTRANSFERASE 106, ...		Potri.011G068001 [exp]	16.34	0.7986
AT3G52220			unknown protein		Potri.010G240300 [exp]	17.88	0.7345
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.012G055500 [exp]	19.10	0.7861
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Potri.002G185400 [exp]	24.49	0.7869
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Potri.004G034100 [exp]	30.09	0.7829
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	39.24	0.7146
AT5G66810			unknown protein		Potri.005G137100 [exp]	43.15	0.7303
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.010G212700 [exp]	43.56	0.7605

Compare expression of checked genes

Potri.001G348600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.