Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27925 595 / 0 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT5G39830 265 / 3e-84 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT4G18370 159 / 5e-45 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G27660 94 / 6e-21 Trypsin family protein with PDZ domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129200 [exp] 254 / 8e-80 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 154 / 2e-43 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.013G018300 [exp] 94 / 2e-20 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.002G207200 [exp] 53 / 2e-07 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 51 / 9e-07 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008781 [exp] 613 / 0 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10022234 [exp] 594 / 0 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 237 / 6e-74 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10042822 [exp] 146 / 5e-40 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 130 / 8e-34 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10037815 [exp] 84 / 3e-17 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 66 / 3e-11 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [poplar] [flax] Peptidase_PA PF00089 [poplar] [flax] Trypsin Trypsin CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain
Representative CDS sequence Show only first row Show all	>Potri.001G348800.2 pacid=42788946 polypeptide=Potri.001G348800.2.p locus=Potri.001G348800 ID=Potri.001G348800.2.v4.1 annot-version=v4.1 ATGGCCGGAGCTGCATCTTCTTCTTCTTCTTCTCTTATTTCAACAGGCTTCCTTCTCTGTCATTTTCCTCAGTTTCCGAAGAAGAAAGCAACAACACTCG CTCTATCCTCCAAATCCCACAACAATAAAATATTCATCCACAATCACAAGCAACATAAATTAGCTGTAAACACCACCACCACCACCAAATTATTGAGGGA TTCTTTTCTTGTAGTGTGTACATCAGTCGCCTTATCATTCTCTCTGTTGATTGGGGATGTAGACTCTTCTGCTTTGGCTTTCGTTATCACCACTACCACT CCTCGTAAATTGCAGTCCGATGAACTCGCCACTGTTCGGCTCTTTCAAGAAAACACTCCTTCCGTTGTATACATCACCAATCTTGCTGTCAGACAAGATG CATTTACGTTGGACGTGCTGGAGGTGCCTCAAGGATCCGGTTCTGGGTTCGTGTGGGACAACGATGGTCACGTTGTCACTAATTATCACGTCATTCGTGG TGCTTCTGATCTCAAGGTCACTCTTGCTGATCAATCAACTTATGATGCAAAAGTCGTTGGCTTTGATCAAGATAAGGATGTTGCTGTATTGCGAGTTGAC GCACCCAAAGATAAGCTACGACCCATTCCTGTTGGTGTCTCCGCTGATTTGCTTGTTGGTCAGAAAGTGTTTGCTATTGGCAACCCTTTTGGACTTGACC ATACTCTTACAACTGGCGTCATCAGTGGGCTTCGTAGAGAAATCAGTTCAGCTGCTACTGGCCGTCCAATTCAGGATGTAATACAGACAGATGCTGCTAT TAATCCTGGTAATAGTGGAGGGCCACTTCTTGATAGTTCAGGGAGCCTTATTGGAATAAATACAGCCATATATTCTCCATCTGGTGCATCCTCTGGCGTT GGATTTTCGATTCCAGTTGACACTGTAAGTGGCATTGTTGATCAGTTGGTAAGGTTTGGAAAAGTAACAAGACCCATTTTGGGTATTAAGTTTGCACCTG ATCAATCTGTGGAGCAGTTGGGGGTAAGTGGAGTGCTTGTCTTAGATGCTCCTACAAATGGTCCAGCTGGCAAAGCGGGTTTGCAACCAACCAAACGTGA TGCTTATGGCAGACTTATTTTGGGTGATATCATAACTTCTGTGAACGGAAAAAAGGTTACAAATGGCAGTGACTTGTACAGAATACTTGACCAATGTAAA GTGGGTGAGCAGGTGACAGTGGAGGTGTTGCGTGGTGATCACAAGGAGAAGATTCCTGTAATACTGGAATCAAAGGCTGACGAGTCTTAA
AA sequence Show only first row Show all	>Potri.001G348800.2 pacid=42788946 polypeptide=Potri.001G348800.2.p locus=Potri.001G348800 ID=Potri.001G348800.2.v4.1 annot-version=v4.1 MAGAASSSSSSLISTGFLLCHFPQFPKKKATTLALSSKSHNNKIFIHNHKQHKLAVNTTTTTKLLRDSFLVVCTSVALSFSLLIGDVDSSALAFVITTTT PRKLQSDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDNDGHVVTNYHVIRGASDLKVTLADQSTYDAKVVGFDQDKDVAVLRVD APKDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGSLIGINTAIYSPSGASSGV GFSIPVDTVSGIVDQLVRFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPTNGPAGKAGLQPTKRDAYGRLILGDIITSVNGKKVTNGSDLYRILDQCK VGEQVTVEVLRGDHKEKIPVILESKADES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Potri.001G348800 [exp]	0	1
AT3G19900			unknown protein		Potri.010G169700 [exp]	1.41	0.9729
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Potri.015G047500 [exp]	1.73	0.9688
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	2.00	0.9728	Pt-VAR2.3
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	2.23	0.9622
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	5.29	0.9623	Pt-CLPC.2
AT5G54290		CcdA	cytochrome c biogenesis protei...		Potri.001G406700 [exp]	6.32	0.9549
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	9.00	0.9562
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	9.53	0.9534
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	9.89	0.9571	Pt-CHRC.3
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	12.24	0.9519

Compare expression of checked genes

Potri.001G348800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.