Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CA1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01500 429 / 2e-151 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT5G14740 362 / 2e-126 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT1G70410 287 / 2e-96 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 278 / 3e-93 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT4G33580 181 / 2e-54 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 154 / 4e-45 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041100 [exp] 341 / 1e-117 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 330 / 9e-114 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G076000 [exp] 257 / 1e-84 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G075902 [exp] 252 / 8e-83 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.017G044700 [exp] 204 / 3e-63 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 198 / 4e-61 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 187 / 5e-57 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022235 [exp] 417 / 2e-146 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10008780 [exp] 329 / 1e-111 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10030614 [exp] 296 / 1e-99 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10030874 [exp] 278 / 4e-93 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10016443 [exp] 274 / 2e-90 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10015833 [exp] 192 / 3e-58 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 182 / 2e-52 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 168 / 9e-50 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015892 [exp] 123 / 7e-33 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [poplar] [flax] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Potri.001G348900.19 pacid=42790770 polypeptide=Potri.001G348900.19.p locus=Potri.001G348900 ID=Potri.001G348900.19.v4.1 annot-version=v4.1 ATGGGTATAAAGCCACAGAATCCTAAGGTCCCGTGCACAATGTCGACGGCTTCGATTAACAGCTGGTGTCTCACCTCTGTCTCTGCCTCTAAGAGATCAC TACCCGCATTACGTCCTTCAGTCTTTGCTAGCCTCAACTCCTCTGTTTCTCCTCCTACCCTTATCAGAAACCAGCCTGTTTTCGCAGCCCCTGCTCCTAT TCTCTATCCACCTCGGAGAGGCGAAGAAATGGGAAAGGACTACAACGAGGCCATTGAATCTCTCAAGAAACTCCTCAGTGATAAGGAAGAGCTGAAAACT GTAGCAGCTGCGAAAGTGGAGCAGATAACAGCTGAATTACAAACCGCCTCATCTTCTGACCCCAAGGCATTCGATCCTGTTGAGAAGATTAAATCCGGCT TCATTCACTTCAAGAAGGAGAAATATGACAAGAATCCGGGACTGTACTCCGAGCTTGCCAAAGGCCAAAGCCCCAAGTTTATGGTGTTTGCATGCTCGGA TTCCCGGGTTTGCCCGTCCCATGTGCTTGATTTCCAACCAGGGGAAGCTTTTGTGCTCCGCAATGTTGCGAATATGGTCCCGCCATACGATAAGACTAAG TACGCTGGAGTTGGGGCAGCAGTAGAGTATGCAGTTTTGCATCTGAAGGTGGAATACATTGTGGTCATTGGACACAGCGCCTGTGGTGGAATTAAGGGCC TCATGTCCTTCCCTTATGATGGAACAACATCAACTGATTTCATAGAAGACTGGGTCAAAGTTTGCTACCCTGCCAAGACTAAGGTTTTAGCAGAACATGC CAATGCACCTTTCCCAGACCTCTGTACACAATGTGAAAAGGAGGCAGTGAACGTGTCCCTTGGACACTTGCTAACCTACCCGTTTGTGAGAGATGGCTTG GTGAACAAAACTCTAGGACTGAAGGGTGGTTATTATGATTTTGTCAAAGGCAGTTTTGAGCTCTGGGGGCTTGAGTACAGCCTTTCTCCCTCCCTCTCCG TAAAGGATGTGGCCACCATACTACATTGGAAGCTGTAG
AA sequence Show only first row Show all	>Potri.001G348900.19 pacid=42790770 polypeptide=Potri.001G348900.19.p locus=Potri.001G348900 ID=Potri.001G348900.19.v4.1 annot-version=v4.1 MGIKPQNPKVPCTMSTASINSWCLTSVSASKRSLPALRPSVFASLNSSVSPPTLIRNQPVFAAPAPILYPPRRGEEMGKDYNEAIESLKKLLSDKEELKT VAAAKVEQITAELQTASSSDPKAFDPVEKIKSGFIHFKKEKYDKNPGLYSELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVLRNVANMVPPYDKTK YAGVGAAVEYAVLHLKVEYIVVIGHSACGGIKGLMSFPYDGTTSTDFIEDWVKVCYPAKTKVLAEHANAPFPDLCTQCEKEAVNVSLGHLLTYPFVRDGL VNKTLGLKGGYYDFVKGSFELWGLEYSLSPSLSVKDVATILHWKL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Potri.001G348900 [exp]	0	1	CA1.3
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Potri.006G137500 [exp]	1.00	0.9843	Pt-PRXQ.1
AT4G39230			NmrA-like negative transcripti...		Potri.013G104000 [exp]	2.82	0.9775
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	6.92	0.9750
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.009G037000 [exp]	8.00	0.9582
AT5G04590		SIR	sulfite reductase (.1)		Potri.009G052600 [exp]	8.66	0.9651
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	9.79	0.9647	Pt-ALDH11.1
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.005G063300 [exp]	10.00	0.9679
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Potri.011G138900 [exp]	10.29	0.9272
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.002G007100 [exp]	10.58	0.9601
AT2G39730		RCA	rubisco activase (.1.2.3)		Potri.010G200500 [exp]	16.73	0.9430

Compare expression of checked genes

Potri.001G348900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.