Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01510 775 / 0 LSF1 like SEX4 1 (.1) AT3G52180 141 / 8e-37 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) AT3G10940 113 / 6e-28 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT4G16360 49 / 3e-06 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT5G21170 43 / 0.0004 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT3G55270 43 / 0.0007 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029300 [exp] 125 / 4e-31 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.010G232200 [exp] 117 / 1e-28 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.019G048600 [exp] 112 / 3e-27 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.001G220800 [exp] 47 / 2e-05 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.006G005800 [exp] 46 / 3e-05 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.016G006400 [exp] 46 / 5e-05 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.008G049900 [exp] 46 / 7e-05 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G210900 [exp] 45 / 0.0002 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G023500 [exp] 43 / 0.0005 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008779 [exp] 736 / 0 AT3G01510 703 / 0.0 like SEX4 1 (.1) Lus10022236 [exp] 593 / 0 AT3G01510 567 / 0.0 like SEX4 1 (.1) Lus10038652 [exp] 129 / 2e-32 AT3G52180 456 / 8e-161 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10037924 [exp] 127 / 8e-32 AT3G52180 464 / 2e-163 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10034214 [exp] 114 / 6e-28 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 112 / 2e-27 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10037424 [exp] 50 / 3e-06 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10010322 [exp] 46 / 4e-05 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10041287 [exp] 46 / 4e-05 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10030324 [exp] 47 / 6e-05 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.001G349000.1 pacid=42788148 polypeptide=Potri.001G349000.1.p locus=Potri.001G349000 ID=Potri.001G349000.1.v4.1 annot-version=v4.1 ATGATCACTCCAAATCTAATTCCAAGAGGGGAAATGTCATCGTTTTCTCTGCAAACGCAACTCTCTTCGTTGTTCTGGGGCAGAGATTTATGCATGCTCC ACCGACATGGTTGTGGTAATTATAGAAAGGGAAATTGTTCGAGTAAGGTTTATGCAATGTCAAGTAGGAGTAGCAGTGGCAATTCGGTTTATAAGATGAA TCTGAATGAGTACATGGTCACTCTTGATAAACCTCTCGGTATTCGCTTCGCATTGTCCCTTGATGGCAAAATCTTCGTTCACGCACTCAAAAAAGGGGGA AATGCTGACAGGTCGAGGATAATAATGGTTGGCGATACTTTGAAAAAGGCTAGCGATTCTTCTTCTTCATCTTCTACTACTGATTCCCTTATCCCCATCA ATGATTTTGGTGACACAATGAAGATTCTGCTGGAGAAAACCACAGGAGGAGGTGGTGGTGGAGGAGCCTTTAGCCTTGTCCTTGAGAGGCCTTTCTCGCC TTTTCCAATTCATCAACTGAGTAGTGATTTTGATATTATTTTTTTCAATAGAGGACGTGTTCCCACCGCCACTTGGAGCAAAACCATCCTCTCTTCGGCT TTTCAGGGAAATGGAAATTCTGGCTTTGTAACCTTTTCTTCCAAGTTCTTGACTCCCCATGGATGGAACAAGCTTTTCAATCATCAAATTGTTCCTTCAC AACAACTAAACATTAATCTTTCTCCTCCCATCACCCAAATTGTTTCTATTTTTACTGAGAAAGAGCCAGGAGATGGGGAATGGTCTCATGGGAGCTTTCC ATTGGAGGAATATATCAAGGCACTTGATCGTTCTAAAGGGGAGCTTTACTACAACCATTCTCTTGGTATGGGCTACAGTAAGGTTACAGAGCAAATATAT GTGGGATCGTGTATACAAACACAAGCTGATGTGGAAAATTTGTCTAAACTGGGGGTCACTGCTGTGCTCAATTTCCAGAGTGGTATTGAAGCAGAAAACT GGGGAATCAATTCCAACTTGATCAATGAGTCATGCCAAAAATTCAATATCCTCATGATCAACTATCCTATAAGGGATGCTGATTCCTTTGACATGCGGAA GAAACTACCATTTTGTGTTGGTCTTCTATTACGCTTACTAAAAAAGAATCATCGCGTGTTTGTCACTTGCACAACTGGATTTGATAGATCCCCTGCATGT GTGATTGCATATCTCCACTGGATGACCGATACTTCCCTTCATGCGGCTTATAATTTTATCACTGGACTGCATCCATGTAGGCCTGACAGACCAGCGATTG CTTGGGCAACATGGGATCTTATAGCTATGGTGGAAAGTGACAGACACGAGGGACCAGCAACACATGCTCTGACTTTTGTGTGGACCGGACAAGAGGGAGA AGATGTATCATTGGTTGGGGATTTTACTGGAAATTGGAAAGAACCAATGAAGGCAAGTCACAAGGGTGGACCAAGATATGAAGTTGAAGTTAGACTTCCA CAAGGAAAGTACTACTACAAGTATATAATTAATGGGCAGTGGCGGCATTCAACAGCTTCACCCACAGAAAGGGATGAAAGAGGGAATCTGAACAATGTGG CAGTGGTTGGTGATATTGCCAGTGTGAGGCCTTCTATTAAACAGCAAAAGAAGGACATCAACATTGTGAAGGTGATTGAGAGGCCATTGACAGAAAATGA GCGCTTTATGTTGGCAAAGGCGGCACGCTGTGTTGCGTTCTCAGTTTGTCCAATCAGACTAGCTCCCAAGTAA
AA sequence Show only first row Show all	>Potri.001G349000.1 pacid=42788148 polypeptide=Potri.001G349000.1.p locus=Potri.001G349000 ID=Potri.001G349000.1.v4.1 annot-version=v4.1 MITPNLIPRGEMSSFSLQTQLSSLFWGRDLCMLHRHGCGNYRKGNCSSKVYAMSSRSSSGNSVYKMNLNEYMVTLDKPLGIRFALSLDGKIFVHALKKGG NADRSRIIMVGDTLKKASDSSSSSSTTDSLIPINDFGDTMKILLEKTTGGGGGGGAFSLVLERPFSPFPIHQLSSDFDIIFFNRGRVPTATWSKTILSSA FQGNGNSGFVTFSSKFLTPHGWNKLFNHQIVPSQQLNINLSPPITQIVSIFTEKEPGDGEWSHGSFPLEEYIKALDRSKGELYYNHSLGMGYSKVTEQIY VGSCIQTQADVENLSKLGVTAVLNFQSGIEAENWGINSNLINESCQKFNILMINYPIRDADSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRSPAC VIAYLHWMTDTSLHAAYNFITGLHPCRPDRPAIAWATWDLIAMVESDRHEGPATHALTFVWTGQEGEDVSLVGDFTGNWKEPMKASHKGGPRYEVEVRLP QGKYYYKYIINGQWRHSTASPTERDERGNLNNVAVVGDIASVRPSIKQQKKDINIVKVIERPLTENERFMLAKAARCVAFSVCPIRLAPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01510		LSF1	like SEX4 1 (.1)		Potri.001G349000 [exp]	0	1
AT1G22800			S-adenosyl-L-methionine-depend...		Potri.013G101700 [exp]	4.47	0.8678
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.004G221700 [exp]	8.60	0.8274
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	15.87	0.8494
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Potri.012G072700 [exp]	27.05	0.8072
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	27.49	0.8531
					Potri.002G048101 [exp]	62.62	0.8169
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Potri.016G038500 [exp]	65.09	0.8013
AT1G78010			tRNA modification GTPase, puta...		Potri.002G092600 [exp]	67.08	0.8490
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	84.07	0.7975

Compare expression of checked genes

Potri.001G349000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.