Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07705 765 / 0 NOT2 / NOT3 / NOT5 family (.1.2) AT5G59710 710 / 0 ATVIP2, VIP2 VIRE2 interacting protein 2 (.1) AT5G18230 49 / 1e-05 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G065900 [exp] 1091 / 0 AT1G07705 716 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Potri.019G032800 [exp] 49 / 8e-06 AT5G18230 846 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Potri.013G059800 [exp] 49 / 8e-06 AT5G18230 829 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004921 [exp] 793 / 0 AT5G59710 681 / 0.0 VIRE2 interacting protein 2 (.1) Lus10040875 [exp] 742 / 0 AT1G07705 659 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Lus10002632 [exp] 44 / 0.0006 AT5G18230 974 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04153 [poplar] [flax] NOT2_3_5 NOT2 / NOT3 / NOT5 family
Representative CDS sequence Show only first row Show all	>Potri.001G349400.1 pacid=42788462 polypeptide=Potri.001G349400.1.p locus=Potri.001G349400 ID=Potri.001G349400.1.v4.1 annot-version=v4.1 ATGTCGGCGTTACTTAATTCTGGTCTAAATGGATCAGCTTCAAATCTTCCGGACAACACGGCGCGATCTTTTGCTACATCCTTCTCTGGCCAGTCCGGTG CGGCAGCCTCTCCTGTTTTTCATCACAGTGGTGGAACTATTCAAGGGCTGCATAATATTCATGGGAGCTTTAATGTACCCAACATGCCTGGAACTTTTGC TTCAAGAAACTCTACAATCAATAACATTCCTTCAGGTGGGGTTCAACAACCTACTGGAAGCCTCTCCAGTGGACGGTTTGCGTCCAATAATCTTCCAGTT GGTCTCTCTCAGCTGTCTCATGGCAGTTCCCATGGACATTCTGGGGTTACAAATAGAGGAGGTTTAAGTGTTGTAGGAAATCCAGGATATGGTAGCAACA CCAATGGAATTGGTGGTTCTATACCTGGTATTCTCCCAACCTCTGCTGGAATAGGTAACCGGAATGCTGTTCCTGGATTGGGGGTTTCCCAAATTTTGGG CAATACAGGTCCTAGGATTACGAGTTCTGGAGGAAACATGGTTGGTGGTGGGAACATTGGGAGAAGCTTAAGCTCGGGTGGAGGACTATCTGTCCCTGGT CTTGCATCTCGTTTGAATTTAACTGCAAATAGCGGATCTGGCAGCTTAGGCATGCAAGGACAAAATAGATTAATGACTGGTGTGCTTCCACAAGGAAATC CACAGGTGATTCCTATGTTAGGAAACTCCTACCCCACTGCCATTGGTCCTCTTTCCCAAAGCCATGTTCAAGGTGTGAACAATCTCAGCTCTATGGGAAT GTTGAATGATGTGATCTCCAATGACAGTTCCCCTTTCGACATTAACAATGATTTCCCTCAGTTGACAAGTCGTCCTAGTTCTGCTGGAGGGCCTCAAGGT CAATTGGGTTCACTACGAAAACCTGGTCTTGGAGTTAGTCCCATTGTTCAACAAAGCCAAGAGTTCAGCATTCAGAATGAAGATTTTCCAGCTTTACCAG GATTTAAAGGTGGTAATGCTGATTACACTATGGATTTGCATCAGAAAGAACAATTGCACGACAATACCTTGTCAATGATGCAATCTCAGCACTTCTCTAT AGGGAGATCTGCTGGGTTCAACTTAGGAGAGGCTTATTCATCCTATCGTCCTCAGCAGCAACAGCAACATGCCCCAGCTGTCAGTAGTGGCGTCTCTTTT GCATCTGTAAACAATCAAGATCTTCATGGTTCAGAACTATTTCCGTCTTCACATTCAGCCTATCACCCACAGACCAGTGGACCACCAGGAATTGGGCTGA GACCTTTAAATTCTCCGAATACGGTATCTGGTGTTGGATCATATGACCAGCTCATCCAGCAGTATCAACACCAGAACCAGCCCCAGTTTCGACTACAACA AATGTCGACTGTCAATCAACCATTTAGAGATCAGGGCATAAAGTCCATGCAGACAGCACAATCTGCACCTGATCCATTTGGGTTACTTGGCTTGTTAAGT GTTATAAGGATGAGTGATCCTGATCTGACCTCCCTGGCACTTGGAATTGATTTAACAACTCTTGGATTGAATTTGAATTCAGCTGAGAGTCTTCACAAGA CTTTTGGCTCCCCATGGTCTGACGAGCCAGCAAAGGGTGATCCAGAGTTCAATGTTCCAAAGTGTTATTATGCTAAGCCACCACCTCCACTGGATCATAA TTACTTTTCAAAGCTCTGGACAGAAACGTTGCTCTATGCCTTTTACAGCATGCCAAAAGATGAAGCTCAATTACATGCCGCAAACATACTTTATGAAAGA GGCTGGTTATACCACAAGGAGCAGCGGCGTTGGTTAAAAAGAGTCCCCAACACAGAGCCACTTGTTAAAACGAGCGCATATGAGAGAGGGTCTTACCATT GTTTTGAACCGAACACATTTGAGATAACACTCAAGGAAAATTTCGTTCTCCATTATGAGATGGTGGAAAAGAGACCGGGTCTGCCTCAACATTAA
AA sequence Show only first row Show all	>Potri.001G349400.1 pacid=42788462 polypeptide=Potri.001G349400.1.p locus=Potri.001G349400 ID=Potri.001G349400.1.v4.1 annot-version=v4.1 MSALLNSGLNGSASNLPDNTARSFATSFSGQSGAAASPVFHHSGGTIQGLHNIHGSFNVPNMPGTFASRNSTINNIPSGGVQQPTGSLSSGRFASNNLPV GLSQLSHGSSHGHSGVTNRGGLSVVGNPGYGSNTNGIGGSIPGILPTSAGIGNRNAVPGLGVSQILGNTGPRITSSGGNMVGGGNIGRSLSSGGGLSVPG LASRLNLTANSGSGSLGMQGQNRLMTGVLPQGNPQVIPMLGNSYPTAIGPLSQSHVQGVNNLSSMGMLNDVISNDSSPFDINNDFPQLTSRPSSAGGPQG QLGSLRKPGLGVSPIVQQSQEFSIQNEDFPALPGFKGGNADYTMDLHQKEQLHDNTLSMMQSQHFSIGRSAGFNLGEAYSSYRPQQQQQHAPAVSSGVSF ASVNNQDLHGSELFPSSHSAYHPQTSGPPGIGLRPLNSPNTVSGVGSYDQLIQQYQHQNQPQFRLQQMSTVNQPFRDQGIKSMQTAQSAPDPFGLLGLLS VIRMSDPDLTSLALGIDLTTLGLNLNSAESLHKTFGSPWSDEPAKGDPEFNVPKCYYAKPPPPLDHNYFSKLWTETLLYAFYSMPKDEAQLHAANILYER GWLYHKEQRRWLKRVPNTEPLVKTSAYERGSYHCFEPNTFEITLKENFVLHYEMVEKRPGLPQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.001G349400 [exp]	0	1
AT5G65620			Zincin-like metalloproteases f...		Potri.014G010100 [exp]	7.21	0.8990
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	14.59	0.8397
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.001G360100 [exp]	23.36	0.7968
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.005G094300 [exp]	30.19	0.7528	Pt-ALATS.1
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.004G212100 [exp]	33.70	0.7334
AT1G79050			recA DNA recombination family ...		Potri.001G438900 [exp]	37.54	0.8020
AT1G31500			DNAse I-like superfamily prote...		Potri.003G106000 [exp]	40.03	0.7416
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Potri.001G160900 [exp]	40.24	0.7735	UFO.2
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.008G080800 [exp]	53.60	0.7993
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	56.92	0.8041

Compare expression of checked genes

Potri.001G349400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.