Plant FIBer expression Database

Potri.001G349500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14710 175 / 5e-58 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014543
[exp]
192 / 9e-64 AT5G14710 186 / 3e-61 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10178 PAC3 Proteasome assembly chaperone 3
Representative CDS sequence
>Potri.001G349500.1 pacid=42792848 polypeptide=Potri.001G349500.1.p locus=Potri.001G349500 ID=Potri.001G349500.1.v4.1 annot-version=v4.1
ATGGAGAGTTCGGTTCAACATTTTCCTGTCACCCATAAAGAGTGTTCTGTAGTTATCAAGGGAAACAAAACAGATATGGTAATTTCCGGTTATGATGACC
ATTTTCTGGTGATTGCTACCCAAATAGGAAGCATGGGCACAATACTGCATGCCAGGAAGGACGAGAGTTTGTCAATCCATCCAACCTTCAACGTGTCTGT
AATCTTTGGAAAACGTGATGAGCCAATGCTTGTCGCTTGTGCTAGACAACTAATTGAACATATAAGTACATCAGGCTCGTCCAAGCCATTGGTGCTCTCT
CTTGGTCTTCAAGACCATTCTTCGGAAACATTGAGAGGAGTTGTCTCTGCCGTAACTGCAAATCGTGTATGGTGA
AA sequence
>Potri.001G349500.1 pacid=42792848 polypeptide=Potri.001G349500.1.p locus=Potri.001G349500 ID=Potri.001G349500.1.v4.1 annot-version=v4.1
MESSVQHFPVTHKECSVVIKGNKTDMVISGYDDHFLVIATQIGSMGTILHARKDESLSIHPTFNVSVIFGKRDEPMLVACARQLIEHISTSGSSKPLVLS
LGLQDHSSETLRGVVSAVTANRVW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14710 unknown protein Potri.001G349500
[exp]
0 1
AT5G57950 26S proteasome regulatory subu... Potri.006G184600
[exp]
5.47 0.8706
AT2G38450 unknown protein Potri.008G075000
[exp]
8.12 0.9056
AT1G61150 LisH and RanBPM domains contai... Potri.004G037600
[exp]
9.48 0.8961
AT1G13245 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 ... Potri.010G129600
[exp]
10.90 0.9164
AT4G26240 unknown protein Potri.006G153800
[exp]
11.22 0.8863
Potri.002G088800
[exp]
12.48 0.9191
Potri.005G172250
[exp]
12.64 0.9097
Potri.003G153400
[exp]
14.69 0.9040
AT3G48480 Cysteine proteinases superfami... Potri.015G090800
[exp]
15.49 0.8917
AT1G05000 AtPFA-DSP1 plant and fungi atypical dual-... Potri.014G159100
[exp]
18.00 0.8632

Potri.001G349500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.