Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G23910 158 / 1e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G30470 147 / 1e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 119 / 9e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 113 / 2e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 110 / 2e-27 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G09480 108 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 103 / 8e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 97 / 2e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 95 / 7e-22 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110500 [exp] 240 / 8e-77 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 234 / 2e-74 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G079500 [exp] 164 / 4e-48 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 162 / 3e-47 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 162 / 4e-47 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G100500 [exp] 147 / 3e-41 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G178700 [exp] 144 / 2e-40 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 114 / 6e-29 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 111 / 7e-28 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022239 [exp] 468 / 4e-166 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008774 [exp] 273 / 2e-91 AT5G14700 253 / 5e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006885 [exp] 166 / 3e-48 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003780 [exp] 158 / 2e-45 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020372 [exp] 150 / 8e-43 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008775 [exp] 118 / 4e-31 AT5G14700 71 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 116 / 1e-29 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 115 / 3e-29 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 115 / 6e-29 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 115 / 2e-28 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.001G349600.1 pacid=42791962 polypeptide=Potri.001G349600.1.p locus=Potri.001G349600 ID=Potri.001G349600.1.v4.1 annot-version=v4.1 ATGGGTTTTGTGCAGACGGAAGAGAGGAGGAAGACGGAGATAGAGGAATTGAAGCGCATGTTGGTAGGTTGTGGCAGGCTCAACAGGAGAAAAGATGATG AAGAATTACAAGGCAGACGTGCTTCATCCAAACAAGCAGCGGAGTTTAATGGTGAAGAGGAGCTTGTGTGTGTCACTAGTGGAGTATCCTACTTAGGCGT CGCCATCGTGAACCGCCTGTTGACTCGTGGCTACTCCGTCAGAATCATCGTTGATAATGAAGAGGATAAAGAGAGACTGAGGGAGTTAGAAACGTCAGGA GAGATGAGGACAAGTAAGAATGGTATCGATGCAGTCATGGCGAAGCTTACTGAAGTTGAAAGCTTAGTAGAGGCATTCCAAGGTTGTCATGGTGTATTTC ACACCTCTGCATTTACCGATCCTGCTGGTCTTTCTGGTTACACTAAATCCATGGCTGAAATAGAGGTGAAGGCTAGTGAGAATGTGATGGAGGCGTGTTC AAGAACACCCTCAGTGAGGAATTGTGTGGTCACATCATCGCTCTTGACCTGCTTATGGCGGGATACAACCACACATGAACTCCCTCCTGTAGTTAATCAT GAGTCCTGGAGTGATGAATCTTTATGCATCCGCAAAAAGCTTTGGTATGCCGTGGGCAAGCTAAGGGCGGAGAAGGCGGCGTGGAAACGAGCAGAGGAGA GAGGGCTAAAACTGGCCACCATCTGTCCAGGTCTCATCACAGGTCCAGAATATTTTGGCAGAAACCCAACAGCCACAATAGCTTATCTAAAAGGAGGCCA AGAAATGTTTAAAGATGGCTTGCTAGCAACCGTCGATGTGATGAAACTTGCAGAGGCACACACATGTGTATATGAAGCGATGAACAAGACAGCATGCGGA AGGTACATCTGCTTCGATCGAGTTATTCAAGTAGAAGACGAAGCAGAGAGGTTGGCTATGGAGATTGGGATCTCTGCAAACCAGATAGTATCTGAAGATG CATCTACCTGTGGTCCAGCTCGGTTTGTACTCTCAAATAAGAAACTTTGTAACCTCATGTCAAGGACACACCGGAATTGTTATAATCAAAGTTAA
AA sequence Show only first row Show all	>Potri.001G349600.1 pacid=42791962 polypeptide=Potri.001G349600.1.p locus=Potri.001G349600 ID=Potri.001G349600.1.v4.1 annot-version=v4.1 MGFVQTEERRKTEIEELKRMLVGCGRLNRRKDDEELQGRRASSKQAAEFNGEEELVCVTSGVSYLGVAIVNRLLTRGYSVRIIVDNEEDKERLRELETSG EMRTSKNGIDAVMAKLTEVESLVEAFQGCHGVFHTSAFTDPAGLSGYTKSMAEIEVKASENVMEACSRTPSVRNCVVTSSLLTCLWRDTTTHELPPVVNH ESWSDESLCIRKKLWYAVGKLRAEKAAWKRAEERGLKLATICPGLITGPEYFGRNPTATIAYLKGGQEMFKDGLLATVDVMKLAEAHTCVYEAMNKTACG RYICFDRVIQVEDEAERLAMEIGISANQIVSEDASTCGPARFVLSNKKLCNLMSRTHRNCYNQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	0	1
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	1.41	0.9077
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	2.00	0.9061	Pt-GT4.1
AT3G01400			ARM repeat superfamily protein...		Potri.002G118800 [exp]	2.82	0.8901
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	3.87	0.9034	Pt-LHT1.2
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	7.07	0.8677
					Potri.016G089400 [exp]	7.14	0.8557
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.017G145700 [exp]	8.66	0.8619
AT5G42440			Protein kinase superfamily pro...		Potri.002G065400 [exp]	12.84	0.8808
AT4G28300			Protein of unknown function (D...		Potri.013G131600 [exp]	13.49	0.8635
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	14.14	0.8743

Compare expression of checked genes

Potri.001G349600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.