Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28460 424 / 2e-150 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005835 [exp] 421 / 1e-148 AT3G28460 363 / 6e-126 methyltransferases (.1) Lus10039461 [exp] 133 / 9e-39 AT3G28460 119 / 5e-34 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03602 [poplar] [flax] Cons_hypoth95 Conserved hypothetical protein 95
Representative CDS sequence Show only first row Show all	>Potri.001G349800.1 pacid=42790777 polypeptide=Potri.001G349800.1.p locus=Potri.001G349800 ID=Potri.001G349800.1.v4.1 annot-version=v4.1 ATGGCGATTTCATCGTCGCCAATAGCTTCTCCTCTAGGTATCAACATCAATACCAAACTTGCATCCTCTTCTTCTTTTCCAAATCTCGCTCTCTTCAACC TCCCTTCCAAGCCCACCAATCGCATTTCAACCATTGTCCTCTCCTCTTACAAAAACTCAGGAAATGGACTGACGAGTGAAGATAAAAAGGCATTATTCGA AAAATACGGTCTTGATCCTAATCAATTCCCATCACAACCTTCTTCTTCTTCACCTTCTCTTAAGACAAAGAGGAGAAAGGAAATCCAAAACCCAGGTAGA GGAAAACAAGTCCGTGAAGAGGATGGGGAGGATAAGCCACAGAGGACCACTCATAGGTTACTTCAGGTGCTTGGAGGAAAGGCTAAAAGAAAGAAGTTGC TCTCTCCCAAAGGCATGGATGTGCGGCCAATGATGGAGGTCGTAAAAGGTTCTGCCTTCGATATATTGCAGGCAGCTGGTGGCTGTCCTGCCTCTCTAAG GCCTGGTCGGTGGTTAGACTTGTACAGTGGCACTGGTTCTGTTGGTATTGAAGCTATCAGTCGAGGATGCTCTGAGGTGCATTTTGTTGAGATGGATCCT TGGGTTGTTTCAAACGTTTTACAACCAAACTTGGAGTGCACAGGATTTCTTGATGTTTCAGTTATACATACTGTTCGCGTTGAAAGCTTTTTAGAGCGCG CAGAGCAATTTGTGGGTCAGGACAGCGCATTTGATTTCATTAGTGTCACACCTCCATATACACAAGTTGATTATGGAATACTGATGGATCAAATTTCAAA ATCACCCATAGTTGGAGAAGATACATTTATCGTAGTAGAATATCCTCTAAGAACTGACATGTTGGATTCATGTGGATGCCTTGTGAAGATAAATGATAGA CGATTTGGTCGGACCCATTTGGCAATTTATGGACCTGAGTGGGCCCAGAAGAAGAGAAAGAAATAA
AA sequence Show only first row Show all	>Potri.001G349800.1 pacid=42790777 polypeptide=Potri.001G349800.1.p locus=Potri.001G349800 ID=Potri.001G349800.1.v4.1 annot-version=v4.1 MAISSSPIASPLGININTKLASSSSFPNLALFNLPSKPTNRISTIVLSSYKNSGNGLTSEDKKALFEKYGLDPNQFPSQPSSSSPSLKTKRRKEIQNPGR GKQVREEDGEDKPQRTTHRLLQVLGGKAKRKKLLSPKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP WVVSNVLQPNLECTGFLDVSVIHTVRVESFLERAEQFVGQDSAFDFISVTPPYTQVDYGILMDQISKSPIVGEDTFIVVEYPLRTDMLDSCGCLVKINDR RFGRTHLAIYGPEWAQKKRKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28460			methyltransferases (.1)		Potri.001G349800 [exp]	0	1
AT1G60230			Radical SAM superfamily protei...		Potri.010G040700 [exp]	4.12	0.9649
AT3G12930			Lojap-related protein (.1)		Potri.011G142900 [exp]	8.30	0.9624
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	8.48	0.9605
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	9.89	0.9599	SIGF.1
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	10.48	0.9605	CYP97C4
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	10.77	0.9641
AT5G66720			Protein phosphatase 2C family ...		Potri.007G028900 [exp]	10.95	0.9440
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	11.22	0.9539
AT4G38225			unknown protein		Potri.004G207400 [exp]	15.09	0.9604
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	16.61	0.9505

Compare expression of checked genes

Potri.001G349800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.