Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28450 763 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 697 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 654 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 456 / 6e-154 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT5G07280 277 / 4e-81 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 271 / 5e-79 BRL1 BRI1 like (.1.2) AT4G39400 267 / 2e-77 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 261 / 2e-75 BRL3 BRI1-like 3 (.1) AT4G33430 248 / 4e-74 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G53890 247 / 6e-71 AtPSKR2 phytosylfokine-alpha receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074400 [exp] 956 / 0 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G081700 [exp] 743 / 0 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 732 / 0 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G240000 [exp] 500 / 3e-171 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 479 / 4e-163 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 478 / 2e-162 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 466 / 9e-158 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 352 / 8e-114 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 321 / 2e-101 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030811 [exp] 695 / 0 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008743 [exp] 466 / 4e-158 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 460 / 3e-155 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10013288 [exp] 373 / 2e-126 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 275 / 2e-80 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 271 / 4e-79 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 261 / 1e-75 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 256 / 1e-73 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 252 / 4e-73 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016395 [exp] 247 / 7e-71 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G349900.1 pacid=42791991 polypeptide=Potri.001G349900.1.p locus=Potri.001G349900 ID=Potri.001G349900.1.v4.1 annot-version=v4.1 ATGAAGTTTTGTACTTTTATTGTTATATTTGCAGCATTAGGTGCCACTGTTTTCGCTGAAGATGATGCGAGGTGCCTGCAAGGTGTGCAGAATTCACTTG GTGACCCAGAAGGGAGGCTGGCAACATGGAACTTTGGAAACACATCAGTTGGATTCATCTGCAATTTTGTTGGGGTGTCATGTTGGAATGATCGAGAGAA TAGGATAATCAACCTCGAATTACGTGACATGAAGCTGTCAGGACAAGTTCCTGAATCCTTACAGTACTGTAAAAGCCTGCAAAACTTGGATCTTTCATCT AATTCTCTCTCCGGTACGATTCCTGCTCAAATATGTACCTGGTTGCCTTACTTAGTCACTCTTGATCTCTCAAATAATGATTTTTCTGGTCCTATACCAC CTGATCTTGCAAACTGTATTTATTTGAATAACTTGATACTATCAAACAATCGTCTCTCTGGGTCTATTCCTCTTGGATTTTCTGCTTTGGGTAGGCTCAA GAAGTTTTCTGTGGCAAATAATGATCTTACCGGTCCTGTTCCTTCCTCCTTTAATAATTATGATTCCGCGGATTTTGATGGGAATAAGGGACTGTGTGGG AGGCCTTTATCTAAGTGCGGTGGGCTAAGCAAGAAGAATCTTGCTATTATAATTGCTGCTGGGGTTTTTGGTGCCGCTTCTTCTTTGTTGTTGGGATTTG GGGTGTGGTGGTGGTATCAGTCAAAGCATTCTGGGAGAAGAAAGGGAGGGTATGACTTTGGAAGAGGTGATGATACTAATTGGGCTCAGAGATTGAGGTC TCACAAGCTTGTTCAAGTTTCTTTGTTTCAAAAGCCTCTTGTTAAGGTTAAATTGGGTGATTTAATGGCTGCTACAAACAATTTTAGTCCAGAGAGTATC ATTATTTCGACTAGATCAGGCACTACTTATAAGGCTGTTCTTCCTGATGGGTCGGCTCTTGCAATCAAGCGTCTTAGTACTTGTAAGCTCGGTGAGAAGC AGTTTCAGTTAGAGATGAATCGATTAGGCCAGGTTAGGCATCCAAATTTGGCACCCCTTTTGGGGTTTTGTGTTGCGGGGGAGGAGAAGCTTTTGGTATA TAAGCACATGTCTAATGGGACTTTGTATTCTTTGCTCCACGGGACTGGTAATGCACTGGATTGGCCAACAAGATTCAGGATTGGTTTCGGTGCTGCTAGG GGTCTAGCTTGGCTTCACCATGGCTACCAGCCTCCATTCCTGCATCAGAACATCTGCTCCAATGCGATTCTTGTCGACGAAGACTTTGATGCTCGGATTA TGGACTTTGGATTAGCGAGGATGATGACTTCCTCAGACTCTAACGAGAGCAGTTACGTTAATGGGGATTTGGGAGAAATCGGTTATGTGGCCCCAGAGTA CTCGAGCACTATGGTTGCTTCACTCAAAGGAGACGTGTATGGATTTGGAGTAGTGCTTTTGGAGCTGGTGACAGGGCAAAAACCTCTCGACATCAGCACC GCTGAAGAAGGATTCAAAGGGAACTTGGTGGATTGGGTAAATAACCTCTCAAGTTCAGGTAGAAGCAAAGATGCAGTTGAGAAAGCTATCTGTGGTAAGG GACATGATGAGGAGATTTCCCAGTTCCTAAAAATTGCTTGTAAATGTGTCATTGCTCGGCCCAAGGACAGATGGTCTATGTACGAGGCTTACCAGTCCTT GAAGATCATTGCCAATGAGCATGGTTTGACATTGTCAGAGCAAGATGACGAATTTCCATTGATTTTTGGCAAACAAGGTCATGATTAA
AA sequence Show only first row Show all	>Potri.001G349900.1 pacid=42791991 polypeptide=Potri.001G349900.1.p locus=Potri.001G349900 ID=Potri.001G349900.1.v4.1 annot-version=v4.1 MKFCTFIVIFAALGATVFAEDDARCLQGVQNSLGDPEGRLATWNFGNTSVGFICNFVGVSCWNDRENRIINLELRDMKLSGQVPESLQYCKSLQNLDLSS NSLSGTIPAQICTWLPYLVTLDLSNNDFSGPIPPDLANCIYLNNLILSNNRLSGSIPLGFSALGRLKKFSVANNDLTGPVPSSFNNYDSADFDGNKGLCG RPLSKCGGLSKKNLAIIIAAGVFGAASSLLLGFGVWWWYQSKHSGRRKGGYDFGRGDDTNWAQRLRSHKLVQVSLFQKPLVKVKLGDLMAATNNFSPESI IISTRSGTTYKAVLPDGSALAIKRLSTCKLGEKQFQLEMNRLGQVRHPNLAPLLGFCVAGEEKLLVYKHMSNGTLYSLLHGTGNALDWPTRFRIGFGAAR GLAWLHHGYQPPFLHQNICSNAILVDEDFDARIMDFGLARMMTSSDSNESSYVNGDLGEIGYVAPEYSSTMVASLKGDVYGFGVVLLELVTGQKPLDIST AEEGFKGNLVDWVNNLSSSGRSKDAVEKAICGKGHDEEISQFLKIACKCVIARPKDRWSMYEAYQSLKIIANEHGLTLSEQDDEFPLIFGKQGHD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	0	1
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	1.00	0.9521
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	3.16	0.9366
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098200 [exp]	3.16	0.9082
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	5.29	0.9042
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	5.74	0.9208
AT1G66920			Protein kinase superfamily pro...		Potri.015G018200 [exp]	6.92	0.8968
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	7.14	0.8953
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	7.74	0.9181
					Potri.017G027900 [exp]	11.48	0.8989
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	12.64	0.9018

Compare expression of checked genes

Potri.001G349900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.