Plant FIBer expression Database

Potri.001G350000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19010 107 / 2e-25 unknown protein
AT1G74860 108 / 3e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G074300
[exp]
758 / 0 AT1G19010 123 / 7e-31 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036649
[exp]
174 / 1e-46 AT1G74860 145 / 3e-38 unknown protein
Lus10033128
[exp]
174 / 2e-46 AT1G74860 147 / 1e-38 unknown protein
Lus10036648
[exp]
56 / 8e-08 ND /
PFAM info
Representative CDS sequence
>Potri.001G350000.1 pacid=42791438 polypeptide=Potri.001G350000.1.p locus=Potri.001G350000 ID=Potri.001G350000.1.v4.1 annot-version=v4.1
ATGGCAGAATCAGAGAAACTGGTGGCGTTGAAGAAAGCGTATGCGGATATAATATTGAACACGGCAAAAGAGGCAGCGAACAGAGTAATGGAGTCTGAGA
GAAAAGCGCTTCGCTATCACCACGATCTCTGCAATTCAAAGGACGAGGCGCTTCGATTGCTTCTTCGCTTAAAACAAATGATCGATGCTAAAACAATTGA
AGCAGAGATAACATCCTCAAGACAACAGAGTAAGATTGATGAGCTTGAGGCACAGCTCCAGGAGGCAGAGGGTGTCATAATAGATCTTAGAGATGAGTTG
AGATGGCTACGTGATGAGCTAGAGAAGGTGAGGAACAGCCAAGGCCAGCCTTCAAATGGAAAGCTTGTAAAGGAAAATGAATCTTCTAACCAAAATTTAA
CTTCTGAGCCCATTATACTCTCAATGACTGATCTGTCACCTCAAACCGTGGCAACTTCTGATGTAAAGAGTGCGCAACTGGATCAGAGAAATTTCAACGA
CAAGTGCCGCAACACAACAGAAGATATTGAGCAATTGACTGTCTTAAATTTTGAGAACTATTCTTCACATGATGCTGACTTAGCTGCCATTATGATGACA
AACAAGGAGCCGGAGCTGTATAGAAATGGTTGTACACAGAGAATTCGTGCATTGGAAGGAAATCTGTTTGCTAGCAGATTGACTCCCCCAGGAGTAGTAG
CTGAGCAGGAATCTCTCATAAAGAATGAGGTTATTTCCAAAGCGAGTAATATGGATGAAGGTAAATGTAGTGTACCTTCTCCTAAGACTAAGGCCTTAGA
AAAAACGAACTTTTTAGGGGAAGAAGGAAGAAAGCGTGTTAAGGTTTGCCCATCGAGACGAAGAAAGAGTAGGTCTGCAAAGGCCAAAGTTAAGCGCAAG
TCTTGTCTCAATGTCAAGAAACCTTATCAACCTCCTTCTATTGTTTCTCGTTGCAAAACAAACTCAGTAAATGGCACCGTTAAATCTGATGGACGTTCAT
GTACCTTGCTCCTTGTCAAGCCTGGCAATATGGATATGAAGAATCCGAGTAAGGTGGAAGAAAAATCGCAGGAAACAAATGACTGCCTCACTGCTGAAAT
GATTGTTCCTGAAGGTAAAAGACCAAGAACAGAGCAGAGTACAAATTCTGTCTCTACATCATCCACAGTCCCTTTGGTTCAGCACTCGGAATTTTTGCAA
CCATCTTCTGTTCTCACTCATTGCAAGACTTACTCATTGTTGCTCCATGATAATGTTAAATCTAACGAAGACCGGTCAAAGGTAACTGAAAATGATGTCA
AGCTGAAGCCACTGCCTCGCTTGGATCCAGGGTTAACACTAATTAGAGGTGGCATGGACTCTATATCTGGCTCTACAAATGCTAAAGTGAGTGTAAAGGC
ACCCTGCAGATCTGGTGTGGCACAAACTGATGCAAACAAGGACATGGAGGGTGTAGATGATTTGGTAAAAGAAGAATGTGATTCTAATCGGAATCCCACA
TTTCCAAGTAATGAATCGGATGATCAGATGGTCAATGTTCCACTTGTATATTCTAATTTGAAAGATACCAAAACATCTGAAGAAACTACTGTCAGTGTAA
TGCTGGTGCACTCTGATATAGAAGTTGCCAAATCATCCATGCAACCTTATGTGTCTCCTAGTCAATCAGACAATAGGCTTCTTAAGTACACTTTTCAGAG
GAAGCACAAGAAGGAAGCTTTGAGCAGCCCTGATAAGAACACTTCTGTTGAAAAGAGCAATTTAAAACGGAAAGCGGAGGAAAATCTAGAATATTCACCA
GAGCCACAGAAATCTAGCTTGATAAACGAGTCATCTGGGGACAATTGCTGA
AA sequence
>Potri.001G350000.1 pacid=42791438 polypeptide=Potri.001G350000.1.p locus=Potri.001G350000 ID=Potri.001G350000.1.v4.1 annot-version=v4.1
MAESEKLVALKKAYADIILNTAKEAANRVMESERKALRYHHDLCNSKDEALRLLLRLKQMIDAKTIEAEITSSRQQSKIDELEAQLQEAEGVIIDLRDEL
RWLRDELEKVRNSQGQPSNGKLVKENESSNQNLTSEPIILSMTDLSPQTVATSDVKSAQLDQRNFNDKCRNTTEDIEQLTVLNFENYSSHDADLAAIMMT
NKEPELYRNGCTQRIRALEGNLFASRLTPPGVVAEQESLIKNEVISKASNMDEGKCSVPSPKTKALEKTNFLGEEGRKRVKVCPSRRRKSRSAKAKVKRK
SCLNVKKPYQPPSIVSRCKTNSVNGTVKSDGRSCTLLLVKPGNMDMKNPSKVEEKSQETNDCLTAEMIVPEGKRPRTEQSTNSVSTSSTVPLVQHSEFLQ
PSSVLTHCKTYSLLLHDNVKSNEDRSKVTENDVKLKPLPRLDPGLTLIRGGMDSISGSTNAKVSVKAPCRSGVAQTDANKDMEGVDDLVKEECDSNRNPT
FPSNESDDQMVNVPLVYSNLKDTKTSEETTVSVMLVHSDIEVAKSSMQPYVSPSQSDNRLLKYTFQRKHKKEALSSPDKNTSVEKSNLKRKAEENLEYSP
EPQKSSLINESSGDNC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19010 unknown protein Potri.001G350000
[exp]
0 1
AT5G58003 CPL4 C-terminal domain phosphatase-... Potri.018G108300
[exp]
2.44 0.8501
AT1G14780 MAC/Perforin domain-containing... Potri.010G104600
[exp]
3.87 0.8420
AT2G11890 adenylate cyclases (.1.2) Potri.018G121300
[exp]
4.35 0.8055
AT5G35560 DENN (AEX-3) domain-containing... Potri.006G143000
[exp]
5.09 0.8499
AT5G53620 unknown protein Potri.012G023200
[exp]
6.92 0.8024
AT3G09010 Protein kinase superfamily pro... Potri.011G049600
[exp]
7.68 0.7774
AT1G64050 unknown protein Potri.001G098500
[exp]
7.93 0.8199
AT5G15870 glycosyl hydrolase family 81 p... Potri.004G105300
[exp]
8.36 0.8274
AT1G34320 Protein of unknown function (D... Potri.019G085900
[exp]
10.19 0.8128
AT4G31770 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHI... Potri.018G015300
[exp]
12.48 0.8285

Potri.001G350000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.