Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15020 1389 / 0 SNL2 SIN3-like 2 (.1.2) AT3G01320 1331 / 0 SNL1 SIN3-like 1 (.1.2) AT1G70060 1132 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 1124 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G59890 419 / 8e-126 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 389 / 4e-115 SNL6 SIN3-like 6 (.1) AT1G24200 185 / 2e-53 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 169 / 3e-48 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G15030 122 / 2e-30 Paired amphipathic helix (PAH2) superfamily protein (.1), Paired amphipathic helix (PAH2) superfamily protein (.2) AT5G35610 117 / 6e-30 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 1316 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 937 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G316300 [exp] 85 / 2e-18 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 62 / 2e-11 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2) Potri.017G056201 [exp] 0 / 1 AT1G24190 0 / 1 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032181 [exp] 1478 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10013293 [exp] 1243 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 1206 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 1046 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10014504 [exp] 996 / 0 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10029217 [exp] 769 / 0 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10014505 [exp] 381 / 2e-118 AT5G15020 449 / 2e-144 SIN3-like 2 (.1.2) Lus10029218 [exp] 204 / 1e-57 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10030816 [exp] 121 / 3e-31 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 116 / 1e-29 AT1G70060 130 / 2e-35 SIN3-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [poplar] [flax] PAH Paired amphipathic helix repeat PF08295 [poplar] [flax] Sin3_corepress Sin3 family co-repressor PF16879 [poplar] [flax] Sin3a_C C-terminal domain of Sin3a protein
Representative CDS sequence Show only first row Show all	>Potri.001G350200.12 pacid=42791063 polypeptide=Potri.001G350200.12.p locus=Potri.001G350200 ID=Potri.001G350200.12.v4.1 annot-version=v4.1 ATGAAGAGAATGAGAGATGATATTTTCTCAGCCCCAGCCCCAGCCCCTGCCCCTGCCCCTGAATTTAAACGGCCCTTAACTTCGACACGTGGAGAATCCT ATGGGCAAACACAAATCCCTGGCGGCGGTGGTGGCGGAGGTAGTGGTAATTCGCAGAAACTAACTACCACCGACGCCTTACAATATCTAAAGGAAGTAAA GGACATGTTTCAAGACCAGAAGGAAAAATATGACATGTTCCTCGAAGTCATGAAAGATTTCAAGGCTCAAAGAACTGACACTTCCGGTGTCATTGTAAGA GTAAAGGAGTTATTCAAAGGTCATAATAACTTGATATTTGGATTCAACACCTTCTTGCCCAAGGGATATGAAATAACCCTAGATGAGGATGAGGCAGCTC CGCCAAAGAAAACTGTTGAATTTAACCAAGCTATCAATTTTGTAAACAAAATAAAGAAACGTTTCCAAAATGATGAACGTGTTTATAAATCATTTCTAGA CATTTTGAATATGTACCGGAAGGAACACAAGGACATAAATGAGGTCTACAGTGAGGTTTCAGCTCTTTTTGAGGATCATCATGATTTGCTTGATGAGTTT GCTAGATTTTTGCCAGATACTTCAGCAACACCCATTACACATACTGTTCCATATGCTCGGAATTCTAACCAGCATTACAATGAACGGAATTCTACTGCAC CCTCCGCACGACAAACACAAATAGACAAGCAGCGTCGGCGTGACAAAGTTTCTTCTTCCCATGCTGAGCGTGACCTTAGTGTTGATCGACCAGAGATGGA AGATGACAAAGGAATGGTGAAAGTGCATAAGGAGCAGAGAAAACGTGCTGACAAGGAGAATTGGGATAGGAGAATTCATGATCAGGATGATAGGGAGCCT GAGCATGATAGCAGTAGAGACTTCAGCTTGCAACCTTTTCTTGAGAAAAGGAATTCTTCCCAGAAGGTGGAAGGTTTTGGAAATTCTAACTTTGCTTGTT ATGATGACAAAGACAACATAAAGAGCATCTACAACCAAGAATTTGTTTTCTTTGAGAAAGTCAAGGAGAAGTTGGGAAATGGAGATGATTATCAAGCATT CTTGAAGTGCCTTAACATTTATAACCAAGGGATTATTAAAAAGAACGAGTTACAAAATTTGGTGACTGATTTACTTGGAAAGTATCCTGATCTTATGGAA GAGTTCATTGATCACCTGGAGTGTCATGGGCATATTGATGGGTTCCTTGCTGGTGTTACGAGCAAAAAATCCCTGGGTAACGATGGACAAGCATCCAGAT CTTTGAAACTAGAGGACAAGGAAAAGGAGCAGAAGCAAATAGACGGAGCTAAAGAAAAGGAAAGATGCAGGGAGAAGTATATGGCTAAATCCATTCAGGA GCTTGACCTTTCTAACTGTGAACGTTGTACTCCTAGTTATCGGTTTCTACCAGATGATTATCCAATATCTTCAGCAAGCCAGAGATCAGAGCTTGGTGCT CAAGTGTTGAATGATCACTGGGTCTCTGTAACATCAGGAAGTGAGGACTACTCTTTTAAACATATGCGTAGAAATCAGTTTGAAGAAAGTCTGTTTAGAT GTGAAGACGATAGATTTGAGCTGGACATGTTGTTGGAATCTGTGAGCTCCACTACCAAGCGTGCAGAAGAATTGTTTAATGGCATAAACGAAAATAAAGT AGAAACCTCAATCCATATTGAAGACCACTTTACCGCTCTAAACTTAAGGTGTATAGAGCGGTTATATGGTGACCATGGTCTTGATGTGATGGAAATATTG CGGAAAAACCGAAGTCTTGCATTGCCTGTTATTTTAACTCGTCTGAAGCAGAAACAAGAGGAGTGGACTAGGTGTCGTACTGATTTTAACAAGGTTTGGG CTGAAATTTATGTGAAAAACCATTACAAATCACTAGATCATCGCAGCTTCTACTTCAAGCAACAAGAATCAAAGAACTTGAGCACAAAATCATTGGTGGT TGAGATCAAGGAGCTGAAAGAAAAACAGCAGAGAGAGGATGGTGTTCTTCTTGCTTTCGCCACTGGAAAAAGACAACCCTTGGTTCCGAATTTGAAATAT AATTACCCAGATAAAAAAATTCATGAAGACTTGTATAAACTTGTCCAATATTCTTGTAAAGAGGTTTGCTCAACCAAAGAACAATTAAATAAAGTTATAA GACTTTGGACTAACTTCGTGGAACCAATGCTGGGTATTGTTTCTCATCCTGATGGCTCGGAGAGTTGTGAAGGTGAAGGGAAACCAAAGCATCCTCTCAT GAATTGCACTTCATCAAGCATAGCAGAAAAGGATGGAAGTCCTAATGCTGTTCCTGCAATATCAACTTTTAAGCAAGCAAAATCACCTAGCAATGGAGAT GAAAACATGTTGCAAGAACTAGGAAACCTTTGCAAGCTCAGTTTGAAAAGTTCAGATAAATTAGCTAAGGAAGATAGCTTATGTGAACTTGATCATGTTG GTAAGGAAGATGGAGCGCTTAATGTGCTTAGACCAGAAAGAGAGCAGAAAGATAAAGTTGTAACTGACAGAGTATCTGGATTTAACATACAAGGAGTAGC AGATACCAAAACATCATTTATGATAGGATCAGAATGTGGTCATGAAAGGAACAGTGCTGGGGAGATAGCAGGTTCAGGTTCAAATGTGTCTGTGCCAGGT GGTGATGCTATTGACCGTCAACTCAATGCTGGTATTGATGCTGGACCTTCTTCAGAGGGTGTGATTGTTGTAAAATCAGTTTTACCTGCAAATGAAGGAG TAAGGGATGGTGCTAAAAATGATAGATGTCATGAAGAATCCACTGGACCATCCAAAATTGAGAAGGAAGAAGGCGAGTTATCCCCTAATGGTGATTTTGA AGAGGATAATTTCGATGCCTATGGAGATACTGGCTTGCAGGCTATTGCCACGGGAAAGAATAGTATTGGATGCATGCGGCATGGATCTGGAAATGATGAG GACTTACACACTCAGGATATCGTAGAAGGACATGATGCTGATGATGAGGATAGTGGGAATGTTTCTGAGGCTCGTGATGCTGCATCAAGCAGCGAGTCTG CTGGTGATGAGTGCTCCCGGGAAGAGCTTGAGGATGATGAAGTAGAACGTGATGATGCGAAAGCTGAGAGTGAAGGTGAAGCTGAGGGGATGGTTGATAC ACAGTATAATGGAGGAGATGCACCATTCCCAGAACACTCTCTCATGTCTGTTAAGCCCCTTGCAAAGCATGTTCCAACAGATTTAGTTAACGAGAAAAGG AGAGATTCCTGGGTTTTCTATGGAAATGATGATTTTTATGTGCTTTTCAGGCTTCATCAGATCCTCTATGACCGTATTTTATCAGCAAGAGTGAATTCAT CTGGTGCTGAAATCAAATGGAGAACTTCTAAGGATGCTAGTTCTCCAGATCCTTATGCCAGATTTATGAGTGCACTATACAGTTTACTAGATGGATCTGT TGATAATGCGAAGTTTGAGGATGAGTGCAGAGCTATTATTGGAAATCAGTCATATGTGTTATTCACACTGGACAAGTTAATATATAAATTAGTCAAACAG CTCCAAACTGTTGCAACTGATGAGATGGCTAGTAAGCTTCTTCAATTGTATGAATACGAAATATCCCGGAAATCTGAGAGCTTCAATGATTTGGTGTATT ATGACAACATGCGGTTTTTCCTTCATGAGGAGAACATATATCGGTTGGAATTTTCATCTGCTCCATCTGTTTTATCCACCCAGCTGATGGACAACGCAAC TGAGAAATCTGAAGTGTTGGCAGTTTGCATGGATCCAACTTTTTCTGCATATTTGCATAATGATTATCTCTCTGTCCATCCTATAAAAATGGAGTCGCAT GACATTACACTGCTGAGAAACAAGCGGAAATATGCTGGCCTAGATGAATTTTCTGCCTTAAGCATGGCCATGGAAGGCGTTAAAATGTTCAATGGTTTGG AGTGTAAGGTTGCCTGCAATTCATGCAAGATTTCCTATGTCCTAGACACGGAAGATTTCTTTTTTCGAACAAGAAGGAAAAGAAGAAATTCACCTCAAGG AAGATCTTTGTATCATGATAAGGTTCAAGCAAGAGTACAACGCTTCCGGAGATTCTTATCAGCTTAA
AA sequence Show only first row Show all	>Potri.001G350200.12 pacid=42791063 polypeptide=Potri.001G350200.12.p locus=Potri.001G350200 ID=Potri.001G350200.12.v4.1 annot-version=v4.1 MKRMRDDIFSAPAPAPAPAPEFKRPLTSTRGESYGQTQIPGGGGGGGSGNSQKLTTTDALQYLKEVKDMFQDQKEKYDMFLEVMKDFKAQRTDTSGVIVR VKELFKGHNNLIFGFNTFLPKGYEITLDEDEAAPPKKTVEFNQAINFVNKIKKRFQNDERVYKSFLDILNMYRKEHKDINEVYSEVSALFEDHHDLLDEF ARFLPDTSATPITHTVPYARNSNQHYNERNSTAPSARQTQIDKQRRRDKVSSSHAERDLSVDRPEMEDDKGMVKVHKEQRKRADKENWDRRIHDQDDREP EHDSSRDFSLQPFLEKRNSSQKVEGFGNSNFACYDDKDNIKSIYNQEFVFFEKVKEKLGNGDDYQAFLKCLNIYNQGIIKKNELQNLVTDLLGKYPDLME EFIDHLECHGHIDGFLAGVTSKKSLGNDGQASRSLKLEDKEKEQKQIDGAKEKERCREKYMAKSIQELDLSNCERCTPSYRFLPDDYPISSASQRSELGA QVLNDHWVSVTSGSEDYSFKHMRRNQFEESLFRCEDDRFELDMLLESVSSTTKRAEELFNGINENKVETSIHIEDHFTALNLRCIERLYGDHGLDVMEIL RKNRSLALPVILTRLKQKQEEWTRCRTDFNKVWAEIYVKNHYKSLDHRSFYFKQQESKNLSTKSLVVEIKELKEKQQREDGVLLAFATGKRQPLVPNLKY NYPDKKIHEDLYKLVQYSCKEVCSTKEQLNKVIRLWTNFVEPMLGIVSHPDGSESCEGEGKPKHPLMNCTSSSIAEKDGSPNAVPAISTFKQAKSPSNGD ENMLQELGNLCKLSLKSSDKLAKEDSLCELDHVGKEDGALNVLRPEREQKDKVVTDRVSGFNIQGVADTKTSFMIGSECGHERNSAGEIAGSGSNVSVPG GDAIDRQLNAGIDAGPSSEGVIVVKSVLPANEGVRDGAKNDRCHEESTGPSKIEKEEGELSPNGDFEEDNFDAYGDTGLQAIATGKNSIGCMRHGSGNDE DLHTQDIVEGHDADDEDSGNVSEARDAASSSESAGDECSREELEDDEVERDDAKAESEGEAEGMVDTQYNGGDAPFPEHSLMSVKPLAKHVPTDLVNEKR RDSWVFYGNDDFYVLFRLHQILYDRILSARVNSSGAEIKWRTSKDASSPDPYARFMSALYSLLDGSVDNAKFEDECRAIIGNQSYVLFTLDKLIYKLVKQ LQTVATDEMASKLLQLYEYEISRKSESFNDLVYYDNMRFFLHEENIYRLEFSSAPSVLSTQLMDNATEKSEVLAVCMDPTFSAYLHNDYLSVHPIKMESH DITLLRNKRKYAGLDEFSALSMAMEGVKMFNGLECKVACNSCKISYVLDTEDFFFRTRRKRRNSPQGRSLYHDKVQARVQRFRRFLSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	2.23	0.8505	XRN4.1
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	3.00	0.8786
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.004G174700 [exp]	5.47	0.8488
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.013G033800 [exp]	6.24	0.8257
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	6.48	0.8573
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	6.92	0.8581
AT4G30790			unknown protein		Potri.006G180800 [exp]	7.07	0.8095
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Potri.003G066200 [exp]	8.48	0.8099	Pt-PSD.2
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	12.36	0.8409
AT5G20170			RNA polymerase II transcriptio...		Potri.015G057100 [exp]	12.64	0.7606

Compare expression of checked genes

Potri.001G350200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.