Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14950 1678 / 0 GMII, ATGMII golgi alpha-mannosidase II (.1) AT3G26720 293 / 2e-83 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 290 / 1e-81 Glycosyl hydrolase family 38 protein (.1) AT5G13980 280 / 2e-79 Glycosyl hydrolase family 38 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073900 [exp] 1993 / 0 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 536 / 0 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.007G056300 [exp] 291 / 2e-82 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.014G143600 [exp] 285 / 2e-80 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 281 / 7e-79 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.012G106500 [exp] 275 / 5e-77 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014507 [exp] 1568 / 0 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 1547 / 0 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10039457 [exp] 1543 / 0 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10032179 [exp] 1333 / 0 AT5G14950 1265 / 0.0 golgi alpha-mannosidase II (.1) Lus10035111 [exp] 293 / 7e-83 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 278 / 4e-78 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10012577 [exp] 259 / 3e-71 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 244 / 1e-66 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10014259 [exp] 173 / 8e-44 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10025960 [exp] 156 / 4e-38 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [poplar] [flax] GH_CE PF01074 [poplar] [flax] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [poplar] [flax] Gal_mutarotase PF07748 [poplar] [flax] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [poplar] [flax] GH57_38_middle PF09261 [poplar] [flax] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Potri.001G350400.1 pacid=42791352 polypeptide=Potri.001G350400.1.p locus=Potri.001G350400 ID=Potri.001G350400.1.v4.1 annot-version=v4.1 ATGCCTTTCTCCTCTTACATTGGTGGCAACGCCCGCCGTGGCAACGTGTGGCCCAGCTCACTTCTCCCCACCATCTCTCCCACTCCGACTAGATCAAAAC ACCCATCAAGAAAGTCACGCAAAAGGACGGCTCTGATTAACTTCATCTTCACAAACTTCTTCACCATCGCTCTTTCAATCTCTCTCTGCTTCCTTTTGAT TACCATCCTCCTCTTTGGCATCCCAAAACCCCTCCTCTCCTCTCCTTTTAAATCCAAGCCTCCTTCTTATTACAGGGTCCGGAATAGAAAGCCACCCCAG AATGACAACAGCAACGGAAACAGCAGCAATAACTTCAACGGGAAGGAAGATGGAGCTGGTGGGGCTACTGTGGATATAACCACAAAGGGTTTGTATGATA GGATCCAGTTCTTGGATGAGGATGGTGGGCCGTGGAAGCAAGGTTGGAGAGTGAGCTATAAAGGGGATGAATGGAATAGTGAGAAATTGAAGGTTTTTGT GGTGCCTCATTCGCATAATGATCCAGGCTGGAAGCTTACTGTGGAGGAGTATTATGACATGCAATCTAGGCATATACTTGATACAATTGTCCACACACTT TCTAAGGATCCTCGTCGGAAATTCATATGGGAAGAGATGTCTTATTTGGAGAGATGGTGGAGGGATGCATCAGTGGAAAAAAGAGAATCGTTTACCAATT TAGTCAAGGCAGGACAGTTGGAAATTGTTGGGGGCGGTTGGGTAATGAATGATGAGGCTAATTCGCATTACTTTGCCATAATCGAGCAGATTACAGAAGG GAATATGTGGTTGAAGGACACAATCGGGGTTGTTCCTAAGAATTCATGGGCAATAGATCCATTTGGTTACTCTCCCACCATGGCATATCTGCTTCGTCGT ATGGGTTTCGAGAACATGCTTATTCAAAGAACCCATTATGAGCTGAAGAAGGAACTTGCTTTGCAAAAGAATTTAGAATACACATGGCGTCAGAGCTGGG ATGTTGAGGAAAGCACTGATATTTTTACACACATGATGCCCTTCTATTCCTATGATATTCCTCATACTTGTGGACCAGAGCCTGCTATTTGTTGTGAATT TGATTTTGCTCGAATGCATGGCTTTAATTATGAACTGTGTCCATGGGGCAAACATCCAGTGGAAATCAGCCAGGAAAATGTTCAGGAGAGAGCACTAAAG CTACTGGATCAATACAGGAAGAAATCAACTCTGTACCGGACTAATACCCTCCTTATTCCTCTTGGTGATGATTTCCGTTACATCAGTATTGATGAAGCAG AGGCTCAGTTTCGGAATTACCAAATGTTATTTGATTACATCAACTCCAATCCCAGTTTAAATGCAGAGGCAAAATTTGGTACTTTGGATGATTACTTCCG AACTCTTCGTGAAGAGGCTGACAGGATAAATTATTCTCTTCCTGGAGAGGTTGGCTCTGGTCAGATTGGGGGTTTTCCATCTCTATCAGGTGACTTCTTT ACTTATGCTGATAGGCAACAGGACTATTGGAGTGGCTATTACATCTCAAGGCCTTTCTTTAAGGCTGTTGATCGGGTACTAGAGCAAACACTTCGTGCTG CAGAAATAATGATGGCTTTGTTGCATGGTTATTGCCAGAGAGCACAATGTGAAAAATTGGCCACAGGGTTTGCCTACAAGATGACTGCTGCGAGGAGGAA TTTAGCTCTTTTCCAACATCATGATGGGGTAACTGGCACGGCTAAGGATCATGTTGTTCAGGACTACGGAATTCGGATGCATACTTCTTTACAGGACTTG CAAATTTTCATGTCCAAATCAATTGAAGTACTCCTTGGTATTCACCATGAAAAGTCTGATCATAGTCCATCCCAGTTTGAGTCAGAACAGGTGAGATCTA AATATGATGTTCAACCAGTGCTTAAGGCAATCAATGCTCGTGAAGGAACTTCACAATCTGTTGTGCTTTTTAATCCCTTGGAGCAAACTAGAGAAGAGGT TGTGATGGTCATTGTTAAAAGGCCTGATGTTACTGTTTTGGATTCAAACTGGACTTGTGTCCCAAGCCAAGTGTCCCCTGAATTGCAGCATGATAAAAGC AAGATTTTTACTGGGAGGCATCGTCTCCATTGGAAAGCTTCTGTTCCTGCCATGGGATTGCAAACATATTATGTTGCTAATGGTTTTGAGGGATGTGAAA AAGCGAAACCAGCAAAACTAAAATACTTCTCGATGTCTAATTCATTTTCTTGCCCTGCTCCGTATGCTTGCTCCAAAATAGAAGAAGGCGTGGCTGAAAT TCAGAATCAACATCAAACTCTCACCTTTGATGTCAAGCATGGTTTGTTGCAGAAAGTAACTAATACAGATGGTTCCATGAATGCTGTGGGTGAAGAAATA GGAATGTACTCTAGTCGGGGAAGTGGGGCCTACCTATTCAAACCCAATGGTCATGCTCAACCTATCATTGAGGCTGGTGGGCACATGGTGATATTTGAGG GTCTATTGGTTCAGGAAGTGTATTCTTATCCTAAAACGACATGGGAAAAAGCCCCCATCTCCCATAGCACTCGAATTTATAATGGAGATAGCACTATGAG GGAATTGCTTATCGAGAAAGAATACCATGTTGAGCTTCTTGGCCAAGATTTTAATGACAGGGAATTGATAGTTAGATACAAGACAGATCTTGATAATAAA AGGATTTTCTTTTCTGATTTAAATGGCTTCCAGATGAGCAGGAGAGAGACTTATGATAAGATACCCCTGCAGGGGAATTACTACCCTATGCCTTCTCTAG CATTCATGTTAGGATCCAATGGCAAGAGGTTTTCTGTCCATTCTAGACAGTCACTGGGTGTGGCCAGCCTTAAAGATGGATGGTTAGAGATTATGCTTGA CCGCCGTTTGCTAAGAGACGATGGACGTGGTCTTGGGCAAGGAGTGATGGATAATCGTCCAATGAATGTGATCTTTCACCTTCTTTTTGAGTCTAACATT TCTTCCACTTCAGATCCTGTTTCCAATCCTCTTCCCCTCAGCCCTTCTCTTCTCTCACACTTAGTTGGTGCTCACTTGAATTATCCATTGCATGCATTTG TAGCGAAGAATCCCCAGGAGTTATCTGTGCAACCACCTCCAAGATCCTTCTCACCTTTGGCTGCTCCCTTGCCTTGTGACTTGCATATGGTGAATTTTAA AGTTCCCCGGCCATCAAAATATTCTCAGCAGCTGATTGAAGATCCTAGGTTTGTCCTGATCTTACAGAGGAGGCATTGGGATACTTCATACTGTCGAAAG GGTAGATCTCAGTGTACCACTGTTGCTAATGAACCTCTAAATCTTTTCAACATGTTCAAGGGGCTTGAGGTGTTGAAAGCAAAGGCAACTTCTTTGAATC TTTTGCATGAAGACATAGAGATGCTTGGATATATGGAGCAGGTTGCGGATGTGGGTCAAGAGGGACATGTAGTCATCTCTCCCATGGAAATACAGGCATA CAAGTTGGTACTACGGCCACACCAGTAA
AA sequence Show only first row Show all	>Potri.001G350400.1 pacid=42791352 polypeptide=Potri.001G350400.1.p locus=Potri.001G350400 ID=Potri.001G350400.1.v4.1 annot-version=v4.1 MPFSSYIGGNARRGNVWPSSLLPTISPTPTRSKHPSRKSRKRTALINFIFTNFFTIALSISLCFLLITILLFGIPKPLLSSPFKSKPPSYYRVRNRKPPQ NDNSNGNSSNNFNGKEDGAGGATVDITTKGLYDRIQFLDEDGGPWKQGWRVSYKGDEWNSEKLKVFVVPHSHNDPGWKLTVEEYYDMQSRHILDTIVHTL SKDPRRKFIWEEMSYLERWWRDASVEKRESFTNLVKAGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLKDTIGVVPKNSWAIDPFGYSPTMAYLLRR MGFENMLIQRTHYELKKELALQKNLEYTWRQSWDVEESTDIFTHMMPFYSYDIPHTCGPEPAICCEFDFARMHGFNYELCPWGKHPVEISQENVQERALK LLDQYRKKSTLYRTNTLLIPLGDDFRYISIDEAEAQFRNYQMLFDYINSNPSLNAEAKFGTLDDYFRTLREEADRINYSLPGEVGSGQIGGFPSLSGDFF TYADRQQDYWSGYYISRPFFKAVDRVLEQTLRAAEIMMALLHGYCQRAQCEKLATGFAYKMTAARRNLALFQHHDGVTGTAKDHVVQDYGIRMHTSLQDL QIFMSKSIEVLLGIHHEKSDHSPSQFESEQVRSKYDVQPVLKAINAREGTSQSVVLFNPLEQTREEVVMVIVKRPDVTVLDSNWTCVPSQVSPELQHDKS KIFTGRHRLHWKASVPAMGLQTYYVANGFEGCEKAKPAKLKYFSMSNSFSCPAPYACSKIEEGVAEIQNQHQTLTFDVKHGLLQKVTNTDGSMNAVGEEI GMYSSRGSGAYLFKPNGHAQPIIEAGGHMVIFEGLLVQEVYSYPKTTWEKAPISHSTRIYNGDSTMRELLIEKEYHVELLGQDFNDRELIVRYKTDLDNK RIFFSDLNGFQMSRRETYDKIPLQGNYYPMPSLAFMLGSNGKRFSVHSRQSLGVASLKDGWLEIMLDRRLLRDDGRGLGQGVMDNRPMNVIFHLLFESNI SSTSDPVSNPLPLSPSLLSHLVGAHLNYPLHAFVAKNPQELSVQPPPRSFSPLAAPLPCDLHMVNFKVPRPSKYSQQLIEDPRFVLILQRRHWDTSYCRK GRSQCTTVANEPLNLFNMFKGLEVLKAKATSLNLLHEDIEMLGYMEQVADVGQEGHVVISPMEIQAYKLVLRPHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.001G350400 [exp]	0	1
AT3G04980			DNAJ heat shock N-terminal dom...		Potri.013G029500 [exp]	1.73	0.9288
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	2.00	0.9282
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.001G269200 [exp]	3.46	0.8951
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	4.47	0.9192
					Potri.002G220667 [exp]	5.47	0.9070
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162200 [exp]	5.65	0.9008
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004500 [exp]	5.91	0.9010	GTC903
AT2G30120			unknown protein		Potri.001G281400 [exp]	6.63	0.8975
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.001G271300 [exp]	7.61	0.8754	Pt-GFA2.2
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.011G001100 [exp]	8.06	0.8943

Compare expression of checked genes

Potri.001G350400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.