Plant FIBer expression Database

Potri.001G350500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14910 144 / 4e-44 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032167
[exp]
162 / 1e-50 AT5G14910 156 / 1e-48 Heavy metal transport/detoxification superfamily protein (.1)
Lus10014520
[exp]
143 / 1e-43 AT5G14910 152 / 4e-47 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G350500.3 pacid=42788292 polypeptide=Potri.001G350500.3.p locus=Potri.001G350500 ID=Potri.001G350500.3.v4.1 annot-version=v4.1
ATGACTTCTACGGTCTCAACTTTCTCAGCTCTACACTCAGTTTGCACTCCCAACGCCACCAGAACTCCATCTCCTCCATTCGCCCGTCGTATCACAACCC
GTTTCCATGGATTTCCCATTTCTTTCAAGCACTTGGCACTGAAAAAGGCCAATGATTTCTATTCCCATGGGCTTAGAAGATTAAGGTCACTTGAAGAGGA
GACTCAAATCCCAGAAGAAGAACAACAACAAGAAGATGTACCAGAACAATCTGAACAACAGACTGTGTCTGTCCCTGTCTCTCCCTCTGACACTCTCACC
ATGTATTTCCAGGCAGAGGGAACAATGAATGAAACGGCCATTCCTAAAGTGACTAATGCCTTAGAGGGAACTGAGGGTGTTACAGATTTAAAGGTTCGAG
TCCTTGAGGGCATTGCAAGTGTCGAGTTGACGAAACAGACTACTGTTCAAGCTACAGGGGTGGCTTCTAGTTTGGTTGAGCTGGTACAGAGTTCAGGTTT
CAAGCTACAAACGTTGAATCTGAGTTTTCAAGATGTGGAGGATGCCCTTGTTTAG
AA sequence
>Potri.001G350500.3 pacid=42788292 polypeptide=Potri.001G350500.3.p locus=Potri.001G350500 ID=Potri.001G350500.3.v4.1 annot-version=v4.1
MTSTVSTFSALHSVCTPNATRTPSPPFARRITTRFHGFPISFKHLALKKANDFYSHGLRRLRSLEEETQIPEEEQQQEDVPEQSEQQTVSVPVSPSDTLT
MYFQAEGTMNETAIPKVTNALEGTEGVTDLKVRVLEGIASVELTKQTTVQATGVASSLVELVQSSGFKLQTLNLSFQDVEDALV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14910 Heavy metal transport/detoxifi... Potri.001G350500
[exp]
0 1
AT5G65220 Ribosomal L29 family protein ... Potri.007G093700
[exp]
1.41 0.9893
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Potri.016G072100
[exp]
2.44 0.9851 Pt-BAS1.2,PtrcPrx2-cysA
AT3G27830 RPL12-A ribosomal protein L12-A (.1) Potri.001G346100
[exp]
3.46 0.9871 Pt-RPL12.6
AT4G37925 NdhM, NDH-M NADH dehydrogenase-like comple... Potri.005G183000
[exp]
3.74 0.9841
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.002G047100
[exp]
5.29 0.9797
AT2G33800 EMB3113 EMBRYO DEFECTIVE 3113, Ribosom... Potri.004G045700
[exp]
5.47 0.9841
AT5G54600 Translation protein SH3-like f... Potri.001G415400
[exp]
5.65 0.9848
AT1G22850 SNARE associated Golgi protein... Potri.019G071900
[exp]
5.74 0.9825
AT1G32550 FdC1 ferredoxin C 1, 2Fe-2S ferredo... Potri.003G090400
[exp]
6.70 0.9796
AT4G21445 unknown protein Potri.011G041800
[exp]
6.70 0.9835

Potri.001G350500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.