Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01380 1395 / 0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) AT2G22530 76 / 2e-13 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010600 [exp] 59 / 2e-08 AT2G22530 941 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.003G059300 [exp] 46 / 0.0001 AT5G17250 1095 / 0.0 Alkaline-phosphatase-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039473 [exp] 1448 / 0 AT3G01380 1466 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10039444 [exp] 1229 / 0 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10025722 [exp] 56 / 2e-07 AT2G22530 1008 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF00884 [poplar] [flax] Sulfatase Sulfatase CL0088 [poplar] [flax] PF04987 [poplar] [flax] PigN Phosphatidylinositolglycan class N (PIG-N)
Representative CDS sequence Show only first row Show all	>Potri.001G350700.3 pacid=42791589 polypeptide=Potri.001G350700.3.p locus=Potri.001G350700 ID=Potri.001G350700.3.v4.1 annot-version=v4.1 ATGAGAGGCAGCGATGGGATCTTGGGGATGAAAGGAGGGGAAAGAAATAGCAGTGAAAAATGGGTAAAGAGACGAGAGAGATGGTTAGTAATACTTGGTG TAGTCCTTCACGCAGTTTATATGCTAAGCATATTCGATATCTACTTCAAGACCCCAATTGTTCATGGCATGCATCCTGTCAAGCCTCGCTTCAAGGCCCC TCCTGCTAAACGTCTTGTTCTCTTAGTTGCGGATGGTTTACGCGCCGATAAGTTTTTTGAGCCCGATTCGGAGGGTAATCACAGAGCACCATTTCTGAGG AATATTATTAAAAACCGAGGTAGATGGGGAGTATCTCATGCCCGCCCTCCCACGGAATCAAGGCCCGGACACGTTTCTATAATTGCTGGTTTCTACGAGG ATCCTAGTGCTGTCACAAAAGGATGGAAAGCTAATCCAGTTGAATTTGATTCAGTCTTCAACCAAAGCAGGCATACATTTGCCTATGGTAGCCCCGATAT TGTTCCAATATTCTGCGGTGCCCTGCCACACAGCACATGGAAAACCTACCCTCATGAATTTGAAGACTTCGCAACTGATGCTTCCTTTTTGGATGAGTGG TCTTTTGATCAATTTCAGAGCCTTCTGAATAGGTCCACCCAGGACCCAGAGTTGAAGGAGTTACTTCTACAGGATAATCTTGTTATATTTCTGCATTTAC TTGGCTGTGATTCAAATGGTCATGCACATCGCCCCTTTTCTTCCATTTATCTCAATAATGTCAAAGTTGTGGACCACATTGCGGAACGAGTTTATTCTCT CCTTGAACATTACTACAAGGACAATCGCACATCATATATATTTACAGCCGATCATGGAATGAGTGACAAAGGTAGTCATGGAGATGGGCATCCTTCGAAT ACAGATACTCCCCTTGTTGTCTGGGGGGCAGGTGTCAAATATCCCAAGCCAATCTCCACTAGCAACAATTCTGATCATGGTGTTTTTGTTGATGAACATG CACATGACATGCCAACTCCTGTAGACTGGGGCTTGAATGGCATTGAAAGGGTGGATGTGAATCAAGCTGATATTGCACCCCTCATGTCAACACTTCTTGG CCTGCCATGTCCTGTAAACTCAGTTGGAAATCTGCCGCTTGGTTATGTGGATATGATTGAGGCTGAAGAAGTTGAAGCTGTTCTAGCTAATACAAAGCAA ATCCTCAACCAGTTTCTTTGCAAATCAAAAATAAAACAGTCAAACTCCTTATATTTCAAGCCTTTTAAACTACTGGCTCATCATTCTGCTGCATTAGAAC ACATCGAGTATCTAATATCTATCAGAGACTATGGAAGTGCAATGATCCTGGCTCAGAACCTCAGAACCTTGGCTCTCAAAGGACTTCAATATTTTCAAAC CTATGATTGGCTTATGCTGATGACTGTAATTACTCTTGGGTACATTGGTTGGATAATCTGTCTTCTTCTCCATATTCTGCAATCTTACACTTCATTGGCA GATGTATTTAAGAATCCTCATGATGCATGGCAGAGAAATAATAAAACGAAGCAGGTATATCTGTTTGGATGTCTGTTGGCGGGAGCGATTTCTGTTTTAT TATTCATGGAGCACTCTCCTCCCTTGTACCATGCATACTTTTCCATGACAGTTTTTCTGTGGACCCAGATAGTGGGTGAATATCAGTTTATAAAAACTTT GTGCCGATGGTTAAGTTGGGGAAAGTATAATTATATAATTAAGATTTTGGCTGCTTCTGCTGTATCAATATTCATCCTTGAATTTCTGGTGAATAGTTTC ACAGAGAGGAAGCTCTACACATGGTGTTTTTTTATTATGGGGATTATAGCTGCTTTTTATCTTTTTCATGCAATTCCCTGGAGATCTGGGATACCGATTT ATGTCTGCTGTGCGTGCTGGTTTCTGTCTGTTTTTACTTTGATGCCAGCAGACATTCCTGATAATAATGGACTAGTGATTGCGAGTGGAGCTATTATTGT CATTATAGGAGCAGCTGCAAGGTGGCTAGATCAGCATTCTGAAGGGAATAAGTTTTGGCTGCGGATCTGCTACCACAAAATGGAGAAACCCAGGTCCCCA GTTCTATTTTTCTTGCAGGTTCTTTTGGTTGGATTATCATCAGCGATGGTGTCAATATCAACATCTCACAGAAAAGAGAAACAAGAATTGCATGCCATAC ACCAGTTAATAAATTGGTCTATTGGCGGTTTCTCAATGGTTCTCCCACTTTTCTCAGAGAAGAGCCTCTTATCACGGCTGACTTCTATATTTCTTGGTTT TGCACCCACATTCCTGCTTCTATCTATTGGATATGAAGCTGTCTTTTATGGTGCACTTGCTCTTGTGCTTGTGGCATGGATACTATTTGAGAACACAATT CTCCATTTGACGAAGGTCGCGAAATTGTCAGCTTCCATGAAAAGAACTGGTGAAAAAACCATGCTTGAAAATGATGTTAGATACTTGCAGCTTTCTGATG TGAGAATTCCATTAATTTTTCTGATTTTGTTTAATGTTGCTTTCTTTGGGACTGGAAATTTTGCAAGTATTGCAAGTTTTGAGATTTCATCGGTGTACCG GTTTATTACTGTCTTCAGTCCTTTTTTGATGGCCACGCTTCTTATCTTCAAACTATTCATACCATTTATGCTTGTCATATGTGTATTCAGTGCTATAACC AAACTACTTCAAGTTCCACGGGTTGGATGCTATTTCCTTGTTATCCTATTTTCAGATGTGATGACCATCCACTTTTTCTTCTTGGTCAGAAATACAGGCA GCTGGATGGAAATTGGTAACAGCATCAGCCATTTTGGGATTGTGAGTGCCCAAGTTGTGTTTGTGCTGTTACTTTTTGCACTCACAAACACATACACAAA AGACATCCAAATTGGATCAGCTGGCTCGTCATCTCAGAAAGCAGCTTAA
AA sequence Show only first row Show all	>Potri.001G350700.3 pacid=42791589 polypeptide=Potri.001G350700.3.p locus=Potri.001G350700 ID=Potri.001G350700.3.v4.1 annot-version=v4.1 MRGSDGILGMKGGERNSSEKWVKRRERWLVILGVVLHAVYMLSIFDIYFKTPIVHGMHPVKPRFKAPPAKRLVLLVADGLRADKFFEPDSEGNHRAPFLR NIIKNRGRWGVSHARPPTESRPGHVSIIAGFYEDPSAVTKGWKANPVEFDSVFNQSRHTFAYGSPDIVPIFCGALPHSTWKTYPHEFEDFATDASFLDEW SFDQFQSLLNRSTQDPELKELLLQDNLVIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAERVYSLLEHYYKDNRTSYIFTADHGMSDKGSHGDGHPSN TDTPLVVWGAGVKYPKPISTSNNSDHGVFVDEHAHDMPTPVDWGLNGIERVDVNQADIAPLMSTLLGLPCPVNSVGNLPLGYVDMIEAEEVEAVLANTKQ ILNQFLCKSKIKQSNSLYFKPFKLLAHHSAALEHIEYLISIRDYGSAMILAQNLRTLALKGLQYFQTYDWLMLMTVITLGYIGWIICLLLHILQSYTSLA DVFKNPHDAWQRNNKTKQVYLFGCLLAGAISVLLFMEHSPPLYHAYFSMTVFLWTQIVGEYQFIKTLCRWLSWGKYNYIIKILAASAVSIFILEFLVNSF TERKLYTWCFFIMGIIAAFYLFHAIPWRSGIPIYVCCACWFLSVFTLMPADIPDNNGLVIASGAIIVIIGAAARWLDQHSEGNKFWLRICYHKMEKPRSP VLFFLQVLLVGLSSAMVSISTSHRKEKQELHAIHQLINWSIGGFSMVLPLFSEKSLLSRLTSIFLGFAPTFLLLSIGYEAVFYGALALVLVAWILFENTI LHLTKVAKLSASMKRTGEKTMLENDVRYLQLSDVRIPLIFLILFNVAFFGTGNFASIASFEISSVYRFITVFSPFLMATLLIFKLFIPFMLVICVFSAIT KLLQVPRVGCYFLVILFSDVMTIHFFFLVRNTGSWMEIGNSISHFGIVSAQVVFVLLLFALTNTYTKDIQIGSAGSSSQKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01380			transferases;sulfuric ester hy...		Potri.001G350700 [exp]	0	1
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	4.47	0.8230
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.001G255000 [exp]	5.00	0.8169
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	5.47	0.8376
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.005G191500 [exp]	7.74	0.8039	SEC5.1
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	15.87	0.7998
AT3G51050			FG-GAP repeat-containing prote...		Potri.005G118300 [exp]	16.91	0.7871
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	20.04	0.8258
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	20.78	0.8058	SCD1.2
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	21.49	0.7731
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	21.90	0.7753

Compare expression of checked genes

Potri.001G350700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.