Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01370 972 / 0 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 457 / 3e-146 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 444 / 3e-141 CRS1 / YhbY (CRM) domain-containing protein (.1) AT5G16180 305 / 1e-90 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT4G14510 269 / 5e-76 ATCFM3B CRM family member 3B (.1) AT3G23070 264 / 1e-74 ATCFM3A CRM family member 3A (.1) AT2G28480 105 / 4e-24 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 99 / 5e-22 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 92 / 1e-19 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT3G27550 79 / 7e-15 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056100 [exp] 470 / 2e-151 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 472 / 3e-151 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.017G116700 [exp] 253 / 4e-71 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 189 / 1e-53 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.007G129600 [exp] 101 / 2e-22 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.013G083000 [exp] 96 / 5e-21 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 94 / 1e-19 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.001G343700 [exp] 79 / 1e-14 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 75 / 2e-13 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039467 [exp] 947 / 0 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10039451 [exp] 458 / 1e-151 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10022091 [exp] 452 / 5e-142 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 453 / 2e-139 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10033576 [exp] 348 / 1e-106 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009671 [exp] 295 / 1e-85 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 295 / 1e-85 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10027610 [exp] 271 / 2e-77 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10017618 [exp] 139 / 5e-35 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10040896 [exp] 103 / 1e-23 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.001G350801.1 pacid=42790704 polypeptide=Potri.001G350801.1.p locus=Potri.001G350801 ID=Potri.001G350801.1.v4.1 annot-version=v4.1 ATGTTGCTTTCCCTTAACCACATTAGCTATGCTTGTCCTTCATCTAGAACACACTCTTCTTCTCTCATCTGCCCAATCCCCAAAACCTTAATTTTCGAGT ACCATAACAGTAGTAGTAGTAGTAATAATAATCCCTCACTCAAATTCCTCGTCCGGAGCTCCAGTGCCGACAACCCCCAAACCCTCCCTCATTCCGCCAT CCAACGCATTGCCGACAAGCTCCGCTCCCTGGGCTTCACCGAAGAAACCGAAACCAAAGCGCAAACCACTGCTGGAGAAATCTTCATCCCTTTACCAAAT CGATTGCCCAAGTACCGGGTCGGCCAAACTCTCGACCCGAGCTGGAGCACGCCGGAGAATCCGGTACCGGTGCCGGGTTCCGGGAAGGCTATATCTAGGT ATCATGAACTGAGAAGAGAGGTGAAGAGAGAAAGAGAAGCAAAGAAAGGAGAGGCAAAAGTCCCGTCATTGGCGGAATTGAGTTTACCCAATGAGGAATT GAGGAGGCTGAGGACAATTGGGATTGCGGAAAAAAGGAAATTGAAGGTCGGGAAAGCAGGGATTACGGAAGGGATAGTGAATGGTATTCATGAGAGGTGG AGGAGGTCCGAGGTTGTTAAGATTGTCTGTGAGGATTTGTGTAGAATGAACATGAAGAGGACTCATGATTTATTGGAGAGAAAAACTGGAGGGTTAGTTG TGTGGAGGGTTGGCAGTAAAATAGTGTTGTATAGAGGTGCCGATTATAAGTATCCCTACTTCCTTGCAGAAACTAGTTCAGTGAATGAAACTTCTCCTGA TGCTGTACAAAATATAGACGTGGATGATAAAGAAGTTGATGAGGAGGGGAGTGTCCTGTCTGCCGTGGATGGCGCAGCTCCACCTGAACCAAGATCATCC GATGAAATAGTTAGACCGAGCTTAGTCCAAGGGGTTGGTTCCCCCAATAGAGTACGGTTTCAATTGCCGGGGGAGGCACAACTTACAGAAGAAGCTGATC AGTTGTTGGATGGACTAGGCCCCCGATTTAATGATTGGTGGGGATATGATCCACTCCCAGTTGATGCTGATCTCTTACCTGCTGTTGTTTCTGGATATCG GAGACCCTTCCGTCTTCTTCCATATGGTGTCAGCCCCACTCTGACAAATGATGAAATGACCACATTAAAGAGGCTTGGTCGACCCCTGCCTTGCCATTTT GCCTTAGGTCGAAATACGAAACATCAAGGATTGGCTGCTTCAATTGTCAAGCTTTGGGAAAAATGTGAGATTGCTAAAATTGCAGTTAAGAGGGGAGTGC AGAATACTAATAGTGAGTTGATGGCTCAAGAATTAAAATGGCTGACCGGAGGAACTTTGCTTTCACGGGATAGAGAATTTATTGTATTGTATCGGGGAAA GGATTTCCTACCATCTGCAGTTTCCTCTGCAATTGAAGATCGAAGAAAGCGTGGAGATATGGATAAACGATGGACAGACTGTATTACATCAAATGAAACT TCGGAGGAGCTTAAAGACAGGAGTTGGAGGACTACAAATGCTAAATCTAGAGATGAAATTGATGATACCAATGACCGGAAACATGATCTCTCTGAAAATA AAAACTTGAGGTCCACTGATGCAGCAATTAAAAGGACTAGCATCAAATTGTCCATGGCACTAGAAAAGAAAGCCAAAGCCGAGAAACTTCTTTCAGAGCT AGAGAAATCAGAGATGTCCCAGCAGCCAGAAATAGATAAAGAGGGGATAACTGAAGAAGAAAGATATATGTTACGGAAGATCGGCTTGAAAATGAAGCCT TTCCTTTTAATGGGTAGACGGGGGGTTTTTGATGGAACAATTGAAAACATGCACCTTCACTGGAAATATAGGGAGCTTGTAAAGATAATATGTAAAGAGA AGAGCTTTCAGGCTGTTCAAGCAGTAGCACGGACCTTGGAGGCTGAAAGTGGTGGAATATTAGTGGCAGTGGAGGGTGTCAGTAAGGGTTATGCTATTAT CCTGTATCGCGGGAAGAATTATACACGACCTGCTTGTTTAAGGCCTCCAACACTCCTGAGTAAAAGGCAAGCAATGAAACGCTCTTTAGAGGCACAACGA CGAGAGTCATTGAAGCTTCATGTTTTGCGGCTCACCAGTAACATAGACCACTTGAAACTTCAATTAGTTAAAGACAAGGAAGCCTATAATGTACAGTGCT TTGATGAATCAAAATTTCAGGTTAAAGATGAATTAGAAGAACCTGCAAGAACAGATTCTGAACTGAAGCCTGATTGTCATTCATATTCAACCATTCCTGC TGATTGTAATGCGATTATTGAGACTAGGGATGAACATGGAGTTGATTCAACTGCTGTTAATCAAAATGATAGCCTGGGTGCATCAGCGAATCATAAGCAA CTTCAACCTGCTCAACGGTCTAATTGGACTGATCTTTATCCAACATTTGATGGGAATAGGACTGGTGAAAATGAACCTAATTCTTCACCTGAATTCTCAA ATGAAAAGAATGTGTCTCACCTTAATGCCAAGAACTGTGTTTCTTTCAATGAGGAAATGGGATCATCAGTCAAATCAGCTGAAAATCAGTCGGGAGAATC AGTTCCAATTGTGGTGGAAGAGGACAATAGAAAGCCTTCCAGCGTTGTTTGTCTTTCCAATAGAGACAGACTTCTTCTAAGAAAGCAAGCCCTCAAGATG AAAAACCGTCCAGTGCTTGCAGTAGGGAGGAGCAACATTGTCACTGGTGTTGCAAAAACAATAAAGGCCCACTTTCAGAGGCATCCTTTTGCTATTGTAC ATGTCAAAGGCAGAGCCAAAGGAACTTCTGTCCAGGAGGTGGTTTCCAAGTTGGAGGAAGCAACAGGTGCAGTTCTAGTCTCTCAGGAGCCCAGCAAGGT CATACTTTACCGGGGTTGGGGTGCAGGTGAACCAGGCCACAAGGGCAAGGAAAATAAGCAAAATGCCGGGGAGGCATCTAGAGCAAAGGGCAGGAGTCGG CATGCTGTGTCTCTTGAGCTCATGGAAGCAATCAGACTTGAATGTGGGCTGCAGCACAACCACCAAGCTAACAGACCAACTTCATCTGTATAA
AA sequence Show only first row Show all	>Potri.001G350801.1 pacid=42790704 polypeptide=Potri.001G350801.1.p locus=Potri.001G350801 ID=Potri.001G350801.1.v4.1 annot-version=v4.1 MLLSLNHISYACPSSRTHSSSLICPIPKTLIFEYHNSSSSSNNNPSLKFLVRSSSADNPQTLPHSAIQRIADKLRSLGFTEETETKAQTTAGEIFIPLPN RLPKYRVGQTLDPSWSTPENPVPVPGSGKAISRYHELRREVKREREAKKGEAKVPSLAELSLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERW RRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRVGSKIVLYRGADYKYPYFLAETSSVNETSPDAVQNIDVDDKEVDEEGSVLSAVDGAAPPEPRSS DEIVRPSLVQGVGSPNRVRFQLPGEAQLTEEADQLLDGLGPRFNDWWGYDPLPVDADLLPAVVSGYRRPFRLLPYGVSPTLTNDEMTTLKRLGRPLPCHF ALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSELMAQELKWLTGGTLLSRDREFIVLYRGKDFLPSAVSSAIEDRRKRGDMDKRWTDCITSNET SEELKDRSWRTTNAKSRDEIDDTNDRKHDLSENKNLRSTDAAIKRTSIKLSMALEKKAKAEKLLSELEKSEMSQQPEIDKEGITEEERYMLRKIGLKMKP FLLMGRRGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKGYAIILYRGKNYTRPACLRPPTLLSKRQAMKRSLEAQR RESLKLHVLRLTSNIDHLKLQLVKDKEAYNVQCFDESKFQVKDELEEPARTDSELKPDCHSYSTIPADCNAIIETRDEHGVDSTAVNQNDSLGASANHKQ LQPAQRSNWTDLYPTFDGNRTGENEPNSSPEFSNEKNVSHLNAKNCVSFNEEMGSSVKSAENQSGESVPIVVEEDNRKPSSVVCLSNRDRLLLRKQALKM KNRPVLAVGRSNIVTGVAKTIKAHFQRHPFAIVHVKGRAKGTSVQEVVSKLEEATGAVLVSQEPSKVILYRGWGAGEPGHKGKENKQNAGEASRAKGRSR HAVSLELMEAIRLECGLQHNHQANRPTSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	0	1
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	2.82	0.9603
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	4.00	0.9495
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	6.70	0.9537
AT5G20300		Toc90	translocon at the outer envelo...		Potri.018G123300 [exp]	6.78	0.9220
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	8.48	0.9564
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	8.83	0.9188
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	8.94	0.9445
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	10.39	0.9488
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	11.74	0.9090
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	12.40	0.9223

Compare expression of checked genes

Potri.001G350801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.