Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) AT5G40150 436 / 8e-155 Peroxidase superfamily protein (.1) AT5G47000 376 / 5e-131 Peroxidase superfamily protein (.1) AT4G17690 369 / 2e-128 Peroxidase superfamily protein (.1) AT1G24110 362 / 1e-125 Peroxidase superfamily protein (.1) AT5G14130 269 / 7e-89 Peroxidase superfamily protein (.1) AT4G37520 264 / 4e-87 Peroxidase superfamily protein (.1.2) AT4G37530 264 / 6e-87 Peroxidase superfamily protein (.1.2) AT5G67400 256 / 7e-84 RHS19 root hair specific 19 (.1) AT3G49960 255 / 1e-83 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076500 [exp] 408 / 1e-143 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 406 / 5e-143 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 332 / 1e-113 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.017G064100 [exp] 274 / 4e-91 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.004G052100 [exp] 268 / 4e-88 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.001G329200 [exp] 266 / 6e-88 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G053400 [exp] 260 / 2e-85 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.018G089900 [exp] 248 / 9e-81 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.011G062300 [exp] 246 / 4e-79 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039445 [exp] 474 / 1e-169 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10010716 [exp] 394 / 3e-138 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10004234 [exp] 364 / 4e-126 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 359 / 3e-124 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10039471 [exp] 281 / 8e-96 AT5G40150 290 / 2e-99 Peroxidase superfamily protein (.1) Lus10032170 [exp] 279 / 7e-95 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10029201 [exp] 278 / 5e-94 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) Lus10014517 [exp] 276 / 7e-94 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10013955 [exp] 262 / 7e-85 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10012540 [exp] 256 / 1e-83 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G351000.3 pacid=42788451 polypeptide=Potri.001G351000.3.p locus=Potri.001G351000 ID=Potri.001G351000.3.v4.1 annot-version=v4.1 ATGGCAATGCCAAAGGAGCGATTTTTCCTTATTCTCATTTCCTTCTCTTCTCTCATATACCCCTCCCAGTCCAGACTCTCCTACAACTACTACTCCAAAT CCTGTCCAAACTTCAACAAAATCATTCAAGAAACAGTAACCAGCAAGCAGATCACCAGCCCCAGCACCGCAGCTGGCACTCTCCGCCTCTTCTTCCATGA CTGCTTACCCAATGGCTGCGATGCCTCCATCCTCATCTCCTCCACCCCTTTCAACTCCGCCGAGCGTGATGCTGACATCAACCTTTCCTTACCCGGCGAC GCCTTCGACCTTGTCACTCGCGCCAAGACCGCCCTCGAGCTCTCCTGCCCCAACACCGTCTCCTGCGCCGACATCCTCACCATCGCCACCCGTGATCTCG TAACCATGGTCGGTGGCCCTTACTACAATGTCCTCCTCGGGCGCAAAGATTACCGCATCAGTAAATCTTCTTATGTTGAAGGAAATCTGCCAAGACCCAC CATGCCTATGTCTAAAATTATCAGCTTGTTTGCTGTTAAAGGTTTCAGTGTCCAAGAAATGGTGGCACTGAGCGGTGCTCATACAATTGGTTTCTCTCAT TGCAAGGAGTTCAAGAGTTATTTGTATAACGACACGCATTATAATCAGAGATTTGTTCAGGCGTTGCGAAATGCTTGTGCGGATTATCCAAAGAACCCAA CTCTGTCGGTGTTCAATGATATAATGACACCAAATAACTTTGATAATAAGTATTTTGATAATTTGGGTAAAGGGTTGGGGCTATTAGAGTCAGATCATGG GTTATATAACAACCCAATGACAAATCCTTTTGTGGAGATTTATGCCAAGGATGAGAAGAAATTCTTTCAGGATTTTGCAAGAGCCATGGAGAAGCTAAGT GTTTATGGGATCAAGACTGGGAGGAGAGGCGAGATTAGGCGCAGGTGTGATGCCATTAATTAA
AA sequence Show only first row Show all	>Potri.001G351000.3 pacid=42788451 polypeptide=Potri.001G351000.3.p locus=Potri.001G351000 ID=Potri.001G351000.3.v4.1 annot-version=v4.1 MAMPKERFFLILISFSSLIYPSQSRLSYNYYSKSCPNFNKIIQETVTSKQITSPSTAAGTLRLFFHDCLPNGCDASILISSTPFNSAERDADINLSLPGD AFDLVTRAKTALELSCPNTVSCADILTIATRDLVTMVGGPYYNVLLGRKDYRISKSSYVEGNLPRPTMPMSKIISLFAVKGFSVQEMVALSGAHTIGFSH CKEFKSYLYNDTHYNQRFVQALRNACADYPKNPTLSVFNDIMTPNNFDNKYFDNLGKGLGLLESDHGLYNNPMTNPFVEIYAKDEKKFFQDFARAMEKLS VYGIKTGRRGEIRRRCDAIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28200			Peroxidase superfamily protein...		Potri.001G351000 [exp]	0	1
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.001G245300 [exp]	2.23	0.9291	SMO2.1
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Potri.005G144900 [exp]	3.16	0.9146
AT2G42910			Phosphoribosyltransferase fami...		Potri.002G059700 [exp]	9.94	0.8502
AT4G08330			unknown protein		Potri.005G070600 [exp]	10.67	0.9254
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	14.89	0.8450	ACCC.1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.002G084800 [exp]	14.96	0.9032
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G158814 [exp]	15.09	0.8681
AT5G16250			unknown protein		Potri.019G113300 [exp]	16.15	0.9201
AT3G02120			hydroxyproline-rich glycoprote...		Potri.017G094200 [exp]	26.49	0.9069
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.006G000400 [exp]	29.10	0.8603

Compare expression of checked genes

Potri.001G351000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.