Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62680 675 / 0 Major facilitator superfamily protein (.1) AT1G18880 674 / 0 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 663 / 0 Major facilitator superfamily protein (.1) AT1G69870 541 / 0 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 492 / 1e-168 NRT1.6 nitrate transporter 1.6 (.1) AT1G52190 439 / 1e-147 Major facilitator superfamily protein (.1) AT5G28470 431 / 7e-145 Major facilitator superfamily protein (.1) AT1G68570 420 / 3e-140 Major facilitator superfamily protein (.1) AT3G16180 416 / 1e-138 Major facilitator superfamily protein (.1) AT2G02040 407 / 2e-135 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076800 [exp] 1032 / 0 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 786 / 0 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 746 / 0 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 556 / 0 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.006G091600 [exp] 451 / 2e-152 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 437 / 7e-147 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103200 [exp] 436 / 2e-146 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 430 / 2e-144 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 422 / 2e-141 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015351 [exp] 817 / 0 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036669 [exp] 716 / 0 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 688 / 0 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 543 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 537 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10024345 [exp] 445 / 5e-150 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 440 / 1e-147 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 432 / 2e-144 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 431 / 2e-144 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 423 / 3e-141 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.001G351200.2 pacid=42793128 polypeptide=Potri.001G351200.2.p locus=Potri.001G351200 ID=Potri.001G351200.2.v4.1 annot-version=v4.1 ATGGGGGATGAGGAAAAGCAGGCGCCTGCAACCCTTGAGATCTCCATGGAGAACGGAAATTTAAAGGAGGAGAAAACCACTTCAAATGATGAGCCAGAGA TTAAATACGGAGGAATTAAAGCCATGCCCTTTGTCATAGGAAATGAGACCTTTGAGAAGCTTGGTACAGTTGGCTCTTCAACAAATCTTGCTGTGTATCT GACTACAGTTTTCAACATGAAGAGTGTCAAAGCCACCACACTTCTTAATGTCTTTAATGGCACTTCAAACCTGGCACCTCTGATTGGAGCTTACCTCTCT GATACTTACTTTGGACGTTACTGGACCTTGGGTTTTGCTTCTGTCTTTTCTTTCTTGGGGATGGTGGTATTGATGCTAACAGCAGCAATCTCCACCATGC ACCCTCCAAAGTGCGCCCCAGGTGCTGTGTGTGCTGGGCCAACAAGCTGGCAACTAGCCTTCTTATTAAGTGGGTTTGCTTTTTTGGTAATCGGAGCTGG TGGCATCAGGCCTTGCAACCTAGCCTTCGGAGCTGATCAATTCAATCCCAACACTGAATCTGGCAAGAGGGGTATCACTAGCTTCTTCAATTGGTACTAC TTTACCTTCACTTTCGCGGTGATGATCTCGGTAACTGGCATTGTCTATGTGCAATCAAATGTTAGCTGGGCCATTGGTTTGGGGATTCCTGCATTTCTAA TGCTCCTTTCATGTGTAATGTTCTTCGTGGGAACGAGAATTTATGTTATAGTGAAACCTCAAGGCAGCCCCATAACTAGTATAGTACAAGTACTTGTTGC TGCTACCAAGAAACGAGGCCTCAAGGTTCCTGATAATTCAGCTATGTCTCTTTTCAACTATATTCCAGCCAAATCTATCAACTCTAAGCTTCCTAGCACA GAACAATTTAGGTGTCTTGACAAAGCTGCAATCATTACAGATGAAAATCAGATTAACTTGGATGGTACAGCTGCCAACCCATGGAAACTTTGTAGCGTCC AACAAGTTGAGGAGGTGAAATGCTTATTGAGGATAATCCCCGTATGGTCAACATCCATACTTTATCAAATTCCCTTGCTCCAGCAACAGACTTACGCAGT GTTCCAAGCCCTTCAGATGGATAGACGTCTAGGCAGTACCAGTTTCAAGGTGCCCGCCGCAACATATATAATCTTTACAATGTTAACCCTCACCATTTGG ATTCCCCTCTACGACCGAATCATCGTTCCATTTCTTCAAAGGCTTACCGGCAAAGACGGTGGGATAACATTGCTTCAAAGAATGGGGATTGGAATGATTC TAGCGATTCTTTGTACGGTTGTTTCTGGATTGGTGGAAGAAAATAGAAGGCACATTGCTTTAACAAGGCCACCGTTAGGCCAGACGAACAAAGGTGGCTC TATATCATCAATGTCTGGTATGTGGCTGATACCACAACTTGCACTTTCTGGACTCTCTGAGGGTTTCAATTATATTGCACAGATTGAATTCTACTATAAG CAATTCCCAGAAAATATGAGGAGTATTGCCGGATCCGCCTTCTTCGCGGGTGGCGCTCTCGCTAATTATCTCAGTGGTGTCCTTGTTTCTATAGTCCACC AAATTACTTCAGGGAGTAAAACTGGAGATTGGTTGGATGATGATCTTAACAAAGGGAAATTGGATTACTTCTATTACGTGATTGCTGGTTTGGGGATCCT CAACTTTGGATATTTTCTTTTGTGTGCCAAATGGTATAGATACAAAGATGCAGATGATAGCACAGTGGGGATGGCTACAAAAGGAATCTGA
AA sequence Show only first row Show all	>Potri.001G351200.2 pacid=42793128 polypeptide=Potri.001G351200.2.p locus=Potri.001G351200 ID=Potri.001G351200.2.v4.1 annot-version=v4.1 MGDEEKQAPATLEISMENGNLKEEKTTSNDEPEIKYGGIKAMPFVIGNETFEKLGTVGSSTNLAVYLTTVFNMKSVKATTLLNVFNGTSNLAPLIGAYLS DTYFGRYWTLGFASVFSFLGMVVLMLTAAISTMHPPKCAPGAVCAGPTSWQLAFLLSGFAFLVIGAGGIRPCNLAFGADQFNPNTESGKRGITSFFNWYY FTFTFAVMISVTGIVYVQSNVSWAIGLGIPAFLMLLSCVMFFVGTRIYVIVKPQGSPITSIVQVLVAATKKRGLKVPDNSAMSLFNYIPAKSINSKLPST EQFRCLDKAAIITDENQINLDGTAANPWKLCSVQQVEEVKCLLRIIPVWSTSILYQIPLLQQQTYAVFQALQMDRRLGSTSFKVPAATYIIFTMLTLTIW IPLYDRIIVPFLQRLTGKDGGITLLQRMGIGMILAILCTVVSGLVEENRRHIALTRPPLGQTNKGGSISSMSGMWLIPQLALSGLSEGFNYIAQIEFYYK QFPENMRSIAGSAFFAGGALANYLSGVLVSIVHQITSGSKTGDWLDDDLNKGKLDYFYYVIAGLGILNFGYFLLCAKWYRYKDADDSTVGMATKGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	0	1
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Potri.001G348300 [exp]	1.41	0.9631
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.017G094800 [exp]	2.00	0.9630
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.011G142700 [exp]	3.60	0.9288
AT4G17940			Tetratricopeptide repeat (TPR)...		Potri.002G256900 [exp]	3.87	0.9615
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.006G075200 [exp]	6.70	0.9446
AT2G36630			Sulfite exporter TauE/SafE fam...		Potri.006G117900 [exp]	7.61	0.9211
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	8.30	0.9236
AT4G39700			Heavy metal transport/detoxifi...		Potri.010G005300 [exp]	9.79	0.9174
AT1G79160			unknown protein		Potri.011G153600 [exp]	10.09	0.9443
					Potri.005G205000 [exp]	10.19	0.9224

Compare expression of checked genes

Potri.001G351200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.