Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40250 356 / 2e-121 RING/U-box superfamily protein (.1) AT1G23980 238 / 9e-76 RING/U-box superfamily protein (.1) AT2G18650 179 / 2e-52 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT4G30400 165 / 2e-46 RING/U-box superfamily protein (.1) AT3G48030 145 / 4e-40 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G57750 112 / 4e-29 RING/U-box superfamily protein (.1) AT3G03550 94 / 2e-21 RING/U-box superfamily protein (.1) AT5G05810 94 / 2e-21 ATL43 RING/U-box superfamily protein (.1) AT1G72220 94 / 3e-21 RING/U-box superfamily protein (.1) AT4G28890 93 / 8e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072300 [exp] 507 / 0 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 264 / 9e-86 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 262 / 8e-85 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 176 / 1e-50 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 166 / 1e-46 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 96 / 1e-21 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 94 / 5e-21 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 93 / 5e-21 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 94 / 6e-21 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014526 [exp] 310 / 1e-103 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 308 / 9e-103 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10012987 [exp] 253 / 1e-81 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10029178 [exp] 248 / 1e-79 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10019973 [exp] 154 / 3e-43 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10015502 [exp] 152 / 2e-42 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10012745 [exp] 97 / 2e-22 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10023617 [exp] 93 / 6e-21 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10012975 [exp] 92 / 4e-20 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 90 / 1e-19 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G351466.1 pacid=42790963 polypeptide=Potri.001G351466.1.p locus=Potri.001G351466 ID=Potri.001G351466.1.v4.1 annot-version=v4.1 ATGATCTTTGGGAGGGATGTCAGAAGCAAGAAGAAAAGATGGTTGATGGAAGAACATAGCCATTTGAAGATGTCGTCATGGGTTCCAAACGATTATCCAC CTCCCCTTTCTCCTTCCTCGTTGTCTTCCCCATCTACAACTAATACTGTTTTCCATAAAGATTCAAATCCTTCATCTTCTGGTTCTAGAATTAGCCCTGC TGTTCTTTTCGTTATAGTGATTCTTGCTGTACTATTTTTCATCTCTGGTTTGCTCCATTTGCTTATTAGATTCCTCATAAAACATCCAACTTCTTCAGCT GCCTCCCAATCTAATAGGTACCCTGAAATATCTGGTTCAGATGCGCTTCAAAGACAGTTACAGCAGCTCTTCCATCTCCATGATTCTGGTCTGGATCAAG CTTTTATAGATGCCCTTCCTGTTTTTCAGTACAAAGAGATTGTGGGTCCAAAAGAGCCATTTGATTGTCCTGTTTGCCTGTGTGAATTTTCTGAGAAAGA CAAGCTGAGATTGCTTCCTATGTGCAGCCATGCTTTCCATATCAACTGCATCGACACTTGGCTGCTATCCAACTCAACATGTCCTCTTTGCAGGGGAACC CTTTTCAATACAGCTGGGTTTTCGATGGAAAACCCAATGTTTGATTTCGATGACTTAAGAGAGGATGATGAGTGTACTGGTGATGGAGATATTGTTTTCA TTCCTAGTCAAAAGACTGGGGAAATTGAAGGAACTGTTGTTGAAAAGGGGGTGTTACCTGTGAGACTCGGTAAATTCAGGAAGCTAAATGGTGGTGTAGG GGAGGCAGGAGGAGAAACTAGTAGCAGTAATTTAGATGCTAGAAGATGTTTTTCAATGGGTTCGTATCAGTATGTGCTTGGTGATACAGACCTCAGGGTT GGCTTAAGCAATGAGCGGCAAAGTCGTGATATCAAGCCTGCCAGAGGGACCGAACAGAAGGTGAATCTTTCAGTTGATGGAGATTTGGAGGAAAACAAGA TTAGTAGCTTGAGCCAAGGTGAGAGCTTCTCTGTATCCAAAATATGGCTTTGGCGTAATAAGAAGGGAAAATTCTCAAGCTCCTCAGATGCACCGATGGG TATTCCTTCTTAA
AA sequence Show only first row Show all	>Potri.001G351466.1 pacid=42790963 polypeptide=Potri.001G351466.1.p locus=Potri.001G351466 ID=Potri.001G351466.1.v4.1 annot-version=v4.1 MIFGRDVRSKKKRWLMEEHSHLKMSSWVPNDYPPPLSPSSLSSPSTTNTVFHKDSNPSSSGSRISPAVLFVIVILAVLFFISGLLHLLIRFLIKHPTSSA ASQSNRYPEISGSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGPKEPFDCPVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGT LFNTAGFSMENPMFDFDDLREDDECTGDGDIVFIPSQKTGEIEGTVVEKGVLPVRLGKFRKLNGGVGEAGGETSSSNLDARRCFSMGSYQYVLGDTDLRV GLSNERQSRDIKPARGTEQKVNLSVDGDLEENKISSLSQGESFSVSKIWLWRNKKGKFSSSSDAPMGIPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40250			RING/U-box superfamily protein...		Potri.001G351466 [exp]	0	1
AT5G52882			P-loop containing nucleoside t...		Potri.012G035400 [exp]	3.16	0.8348
AT1G17780			unknown protein		Potri.001G376800 [exp]	7.14	0.8343
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	12.08	0.7567
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	12.24	0.7895	Pt-XF1.2
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	15.74	0.8277
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	16.91	0.8165
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.011G102100 [exp]	22.13	0.7715
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.001G465500 [exp]	23.91	0.7762	HEN902,HEN1.2
					Potri.004G234200 [exp]	24.81	0.8101
					Potri.003G063150 [exp]	25.09	0.8178

Compare expression of checked genes

Potri.001G351466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.