Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27700 610 / 0 C3HZnF zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G12640 51 / 4e-06 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49600 50 / 8e-06 ATRBP47A RNA-binding protein 47A (.1) AT4G27000 48 / 2e-05 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G19130 48 / 3e-05 ATRBP47B RNA-binding protein 47B (.1) AT1G11650 47 / 3e-05 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 47 / 6e-05 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 46 / 9e-05 ATRBP47C' RNA-binding protein 47C' (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072100 [exp] 1274 / 0 AT3G27700 607 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.004G143400 [exp] 52 / 2e-06 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 50 / 8e-06 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 48 / 2e-05 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 48 / 3e-05 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.001G269200 [exp] 44 / 0.0007 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014548 [exp] 769 / 0 AT3G27700 593 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10032139 [exp] 754 / 0 AT3G27700 588 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10032140 [exp] 731 / 0 AT3G27700 613 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014547 [exp] 720 / 0 AT3G27700 623 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10012071 [exp] 52 / 1e-06 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 52 / 2e-06 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10027911 [exp] 51 / 2e-06 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10014029 [exp] 49 / 1e-05 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10015696 [exp] 45 / 0.0003 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10019889 [exp] 44 / 0.0004 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.001G351532.1 pacid=42791703 polypeptide=Potri.001G351532.1.p locus=Potri.001G351532 ID=Potri.001G351532.1.v4.1 annot-version=v4.1 ATGGAGCTGAAAGTTTCGCCACTAAAGACAGGTGGTCTTTCTCCTGCTGAATGCATTAGTGATCCTGAGGAGAAGGAAGTCAGTGATGAGGAAGATGATG ATCGCAACCATAAGCATCGTAGACGAGAGACGCGTTCTCAATCTTTGGAGAGAGATTCTCTGGAACCAGTTTCTACAAGGCCATACAGGAAGCATAACAA ACACTTTGAAAATGGGCATCCTTTCCGGGAAAATGAATCTCAAGCTCGTGAAACCTGGAAAAATTATAACTCTGTTTCTCTTGAGAAGGACTATGCCACA AAGTTTGAAAGAATACGACCTGACCTAATGTCATTACCCCGAATGCCTGTGGATTTGAATCAAAGAATCCGGTTAAACCAAACATTTTCTGGAGATCCTG GTCCTAGCAGGGGAAGAGGAAGGGAGTATGGTTCTTGGAGCCAACGTGATTCTAGGTTCAGCTCAGTTGGCATTGCTTCTCAAATGGCTCACCTGGGGCC AAGCCTCTTTGCCGGGAGGGGGTTGGCAAATGTTTCAAATGTGCAGAGTGCATCCTGGAATGCTTTTGGTTTAATGCCAAGAATGTCAAATGGTGGCCTG GATACAATCCATCCCATTGGGTTGCAAGGAACACTCAGACCAGCAGTAAATTCTTCATTGAACATGGGCATTCCTCACCAGAGGTGTAGAGATTTTGAGG AGCGCGGATTTTGTTTAAGAGGGGACATGTGTCCATTGGAGCATGGTGTCAATCGCATCGTGGTTGAAGATGTTCAAAGCCTTTCACAGTTTAATCTCCC TGTTTCACTTCCACGTGCCCAACTACCTGGAACAACTTCTGGACTGGGGGCTGTGCCAACAGTTGGTGCCCCTCCAGCCACATTGATGAATAGCAAAGGA ATGCATGGAAAAAGTAACAAGCCTGGAATAGTTGATGATGGCTTGGGTCTGAACGGTGCGTATACTGGTTCTGTTAGTGTGAGTGGAGGAGACTTGTATG ACCCAGATCAGCCCCTGTGGAATGACAATGGTCCCGAAACTTCTAGTACACTCTTAGCACCACATTCACCTAAATTTGATGAAACTGAATCCATGATAAG TGTGGATCCTTCTGATCACAATCATGCCAGGTTACGTGATGGTGCTGATAATGAATGCCCAATTAGAAGCACTGGGATTGCTGTGGGTTTTCAAGGCATG AATTCTTCTGTTTGGGGTAGAATTGGGTCTTTGAACAATAGATTAGATGTGAAAGAGAAAATCGATTCCACAGCAAGTATGTCAAGTTATATGGAGAGTG AATCCAAGGAAGATCAGGGTGCATTAGACAATGTTCATGGTACTTCCCATCAAGGAAAGTGCACTAATTTTGACGATTGTGGCACAAAAACCATGGATTC ACCTGCCAAGATACATAGCGATACCATGCGTCACACGCGGAAACTATCTCAAAAGGCACTGCGAACACTATTTGTGAATGGCATTCCGCATAAAAGCAAC AAAAGAGACGCTCTACTTTCTCATTTTCAAAAATTTGGAGAGGTTATTGACATTTATATTCCATTGAACAGTGAGCGAGCATTTATTCAGTTTTCTAAAA GGGAAGAGGCAGAAGCTGCTCTAAGGGCACCTGATGCTGTAATGGGCAATCGTTTTATCAGACTGTGGTGGGCTAATCGTGATAGCATACCTGATGATGC TACTTCCCGGGGTGTTCCTGCTACTTCAGGTCTACCCCACCTGTCTATTGGTAACGGTGGAAAGGATAATCTTCAGTTGGCTATTTCAAAGACTACTGTA GTCCCTACCTCTGATACTTCTATGCCTGCCACTGACCACCCTAAGGTCGACATCACAAATGGTCCAGAGGTTTCTCCTCCTATGCAGAAGAAGCTAGAGA ATTTAGAACAATTGAAGGAGGAACTTCGCAAGAAACAGGAGCTGCTGGATCAGAAGCGAAATGACTTTCGGCGTCAGTTGCACAAACTTGAGAAACAAGC TACAGGAGTCAAGGGTGAGGTAGCAACGGAGCCTGCTTCTAAGAGACAAAAAACTGGAATAGCATCTGATGTTGCCAAAGCTGCTACTACGAGGTCTGCT GATCCAGGTGCCGGTGTCGCATCACCACATGGTGGGATAGTGGATAAGAACAAAAGAATGGAGAATATTGTGTCTTCTAGTACCAAAACAAGTACAGTGA TGGCTCTGCAGGAGTCTGCTGGCTCAAAGCAATCAATTCATCCATTAGCACCTGTTGGGCCTCCTTTTTTGATGAATAAATACAAGTTGGACAACCGACC CACAGCGTTTAAAATTATTTCACCTTTACCAGCTGGTTTGGCAAATGTTGCTGCTTTGAAGGAACACTTCTCATCATATGGTTATCTTTCTTCCGTGGAA CTAGAAGATGAGCCTGGTGATTATGATGGTGATGGCAATGGTGATGGATCAGATACAGTAAAAAGTTGTTCAGCTCGTGTGACTTTCGCAACTCGCAGAT CTGCTGAGAGAGCATTCCTTAATGGTAAATGTTGGCAAGGCAAGAATTTGAAGTTTGAGTGGCTGATGACTAGCACTTCTAGCATTGGAGAAAACTCATC TGCTCCCAAGTGTCTTGTACATGCTGATGTACAGCCTGTTAAAAATCTAGCTCGTTTGGATTCCCAGGAAGTTTCTGCATCAGGAAATGGAGAACCTGAA AACCCAGAGAGAAATAATGGTGCTGGCCCAACAGAGTTGGATAAAGCTTCGCAGTGCTGTTCAGCCTCAATTTCAGGTGAGGTAGAGTCACCAAAATGTG AGCCTAGTCCAAAGTCAATATCTCCTGAGAAAGAGTCAACAGAAACGGACCCTAGTCAAACTGCAATGTCAGAGAAAGAGACCCCCGAAGGCATTTTCTG TTTGACGATGGGTTGA
AA sequence Show only first row Show all	>Potri.001G351532.1 pacid=42791703 polypeptide=Potri.001G351532.1.p locus=Potri.001G351532 ID=Potri.001G351532.1.v4.1 annot-version=v4.1 MELKVSPLKTGGLSPAECISDPEEKEVSDEEDDDRNHKHRRRETRSQSLERDSLEPVSTRPYRKHNKHFENGHPFRENESQARETWKNYNSVSLEKDYAT KFERIRPDLMSLPRMPVDLNQRIRLNQTFSGDPGPSRGRGREYGSWSQRDSRFSSVGIASQMAHLGPSLFAGRGLANVSNVQSASWNAFGLMPRMSNGGL DTIHPIGLQGTLRPAVNSSLNMGIPHQRCRDFEERGFCLRGDMCPLEHGVNRIVVEDVQSLSQFNLPVSLPRAQLPGTTSGLGAVPTVGAPPATLMNSKG MHGKSNKPGIVDDGLGLNGAYTGSVSVSGGDLYDPDQPLWNDNGPETSSTLLAPHSPKFDETESMISVDPSDHNHARLRDGADNECPIRSTGIAVGFQGM NSSVWGRIGSLNNRLDVKEKIDSTASMSSYMESESKEDQGALDNVHGTSHQGKCTNFDDCGTKTMDSPAKIHSDTMRHTRKLSQKALRTLFVNGIPHKSN KRDALLSHFQKFGEVIDIYIPLNSERAFIQFSKREEAEAALRAPDAVMGNRFIRLWWANRDSIPDDATSRGVPATSGLPHLSIGNGGKDNLQLAISKTTV VPTSDTSMPATDHPKVDITNGPEVSPPMQKKLENLEQLKEELRKKQELLDQKRNDFRRQLHKLEKQATGVKGEVATEPASKRQKTGIASDVAKAATTRSA DPGAGVASPHGGIVDKNKRMENIVSSSTKTSTVMALQESAGSKQSIHPLAPVGPPFLMNKYKLDNRPTAFKIISPLPAGLANVAALKEHFSSYGYLSSVE LEDEPGDYDGDGNGDGSDTVKSCSARVTFATRRSAERAFLNGKCWQGKNLKFEWLMTSTSSIGENSSAPKCLVHADVQPVKNLARLDSQEVSASGNGEPE NPERNNGAGPTELDKASQCCSASISGEVESPKCEPSPKSISPEKESTETDPSQTAMSEKETPEGIFCLTMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G351532 [exp]	0	1
					Potri.007G054500 [exp]	1.73	0.8770
					Potri.010G111100 [exp]	3.46	0.8604
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104300 [exp]	3.74	0.8662
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	4.89	0.8393
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.014G106200 [exp]	6.32	0.8331	Pt-MTP1.1
AT1G02290			unknown protein		Potri.002G184000 [exp]	6.55	0.7913
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	7.74	0.8308
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Potri.003G166700 [exp]	10.72	0.8404
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	12.32	0.8494
AT2G39950			unknown protein		Potri.010G192800 [exp]	13.26	0.8327

Compare expression of checked genes

Potri.001G351532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.