Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18210 398 / 7e-138 ATPUP10 purine permease 10 (.1) AT4G18220 387 / 3e-134 Drug/metabolite transporter superfamily protein (.1) AT4G18197 369 / 4e-126 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G18205 348 / 4e-118 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G18195 340 / 6e-115 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G18190 316 / 1e-105 ATPUP6 purine permease 6 (.1) AT1G44750 297 / 2e-98 ATPUP11 purine permease 11 (.1.2.3) AT4G08700 265 / 8e-86 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT5G41160 253 / 1e-81 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT1G28220 183 / 3e-54 ATPUP3 purine permease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352200 [exp] 441 / 6e-155 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.001G147600 [exp] 367 / 2e-125 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 331 / 2e-111 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.005G160300 [exp] 172 / 4e-50 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.006G184900 [exp] 145 / 9e-40 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.002G099600 [exp] 144 / 1e-39 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.003G156900 [exp] 119 / 6e-30 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 112 / 1e-27 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026130 [exp] 404 / 9e-140 AT4G18210 382 / 2e-131 purine permease 10 (.1) Lus10008689 [exp] 403 / 2e-139 AT4G18210 382 / 3e-131 purine permease 10 (.1) Lus10038492 [exp] 361 / 5e-123 AT4G18210 344 / 3e-116 purine permease 10 (.1) Lus10028132 [exp] 327 / 3e-109 AT4G18220 361 / 4e-123 Drug/metabolite transporter superfamily protein (.1) Lus10043350 [exp] 317 / 1e-105 AT1G44750 456 / 8e-161 purine permease 11 (.1.2.3) Lus10019503 [exp] 316 / 1e-105 AT1G44750 452 / 1e-159 purine permease 11 (.1.2.3) Lus10030927 [exp] 299 / 5e-99 AT4G18210 336 / 1e-113 purine permease 10 (.1) Lus10040118 [exp] 295 / 2e-97 AT4G18210 336 / 2e-113 purine permease 10 (.1) Lus10010757 [exp] 191 / 4e-57 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10035636 [exp] 187 / 5e-56 AT1G28220 346 / 3e-118 purine permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF16913 [poplar] [flax] PUNUT Purine nucleobase transmembrane transport
Representative CDS sequence Show only first row Show all	>Potri.001G352100.2 pacid=42788640 polypeptide=Potri.001G352100.2.p locus=Potri.001G352100 ID=Potri.001G352100.2.v4.1 annot-version=v4.1 ATGGGAGAAGCTCAGGAAGTTCAACTTCACATCATGGACCAAGAAGCTAAAGATCAAACAAACTTACCTCAATATACAAGTATCACCGATCAGTGCTCAA CGGCTCCACAAACAAGAAACTACAGGCGGTGGATCCGCATGTCAATCTATACAGTCTTTCTCCTAGTTGGACAGTCAGTGGCTATGCTTTTGGGAAGATT GTACTTTGTTAAAGGTGGAAACAGCAAATGGATGGCAACACTAGTGCAACTTGCAGGCTTTCCGGTTCTTATTCCCTTCTATCTCATCTCAACTAACAGT AAACCCAGCACGAATGATAGCCAAATAAAATCACCATCTGTCACAACACTTGCATTGATTTACGTATCGATTGGACTACTTGTAGCAGCAGGCTGCTATC TATACACTATTGGACTGCAGTACCTTCCTGTGTCTACTTTCACCCTCATCTGTGCATCTCAGTTGGCCTTCAATTCTGTCTTCTCCTTTTTTCTCAATGC ACAGAAGTTCACACCATTTATAATCAATTCTCTAGTCCTCCTTACCATCTCCTCTATCCTACTTGTCTTTAATAATGAGTCTTCAGACGGCACTTCTGGA GTCTCCAAAGCAAAATATGCTATTGGTTTCACATGCACTGTTGCTGCTTCCGCGGGGTTTGGACTGGTGCTCTCTTTGACACAGTTCTGCTTCAACAAGG TTATAAGGAGGCAGACATTTAAGGTAGTCCTGGACATGACAATCTATCAACAAATAGTAGCGACTTCTGTTATTGTAGTTGGACTTTTTGCTAGTGGAGA CTGGAAGGGTCTAACAAGAGAAATGGATGGGTATAAAATGGGAAAGGTTTCTTATGTGATGAACTTAGTTGGGACTGCCATATCTTGGCAGGTTTTCGCG ATTGGCTGCGTTGGATTGATTTTTGATGTTTCTTCCTTGTTTTCCAATGCCGTAAGTGTTTTGGGATTGCCTATTGTTCCAGTCGTAGCTGTGTTCGTAT TCAATGACAAAATGGGTGGTGTGAAGGCAATTTCAATGGTGTTGGCTATCTGGGGTTTCATTTCCTATGCCTATCACCACTATCTAGACGACCGTAATTG CAAGGATGAAAAAAGAAATGCCGATGAGGTTTCTAAAGCTCCCATGCTGGAAAGCTAA
AA sequence Show only first row Show all	>Potri.001G352100.2 pacid=42788640 polypeptide=Potri.001G352100.2.p locus=Potri.001G352100 ID=Potri.001G352100.2.v4.1 annot-version=v4.1 MGEAQEVQLHIMDQEAKDQTNLPQYTSITDQCSTAPQTRNYRRWIRMSIYTVFLLVGQSVAMLLGRLYFVKGGNSKWMATLVQLAGFPVLIPFYLISTNS KPSTNDSQIKSPSVTTLALIYVSIGLLVAAGCYLYTIGLQYLPVSTFTLICASQLAFNSVFSFFLNAQKFTPFIINSLVLLTISSILLVFNNESSDGTSG VSKAKYAIGFTCTVAASAGFGLVLSLTQFCFNKVIRRQTFKVVLDMTIYQQIVATSVIVVGLFASGDWKGLTREMDGYKMGKVSYVMNLVGTAISWQVFA IGCVGLIFDVSSLFSNAVSVLGLPIVPVVAVFVFNDKMGGVKAISMVLAIWGFISYAYHHYLDDRNCKDEKRNADEVSKAPMLES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G352100 [exp]	0	1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.005G140700 [exp]	1.00	0.9083	Pt-AP2.14
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.017G131000 [exp]	2.00	0.8910
AT5G54130			Calcium-binding endonuclease/e...		Potri.015G004200 [exp]	4.24	0.8635
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Potri.008G204200 [exp]	5.74	0.8507
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G163850 [exp]	5.83	0.9056
					Potri.006G110601 [exp]	6.63	0.8347
					Potri.013G084650 [exp]	8.66	0.8425
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.004G149100 [exp]	21.72	0.7525
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.004G065400 [exp]	24.97	0.6979	FLS2.2
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172100 [exp]	26.32	0.8631

Compare expression of checked genes

Potri.001G352100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.