Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18220 315 / 9e-106 Drug/metabolite transporter superfamily protein (.1) AT4G18210 302 / 4e-100 ATPUP10 purine permease 10 (.1) AT4G18197 282 / 3e-92 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G18195 272 / 2e-88 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G18205 271 / 3e-88 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT1G44750 257 / 1e-82 ATPUP11 purine permease 11 (.1.2.3) AT4G08700 235 / 2e-74 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT4G18190 233 / 2e-73 ATPUP6 purine permease 6 (.1) AT5G41160 222 / 2e-69 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT2G33750 146 / 1e-40 ATPUP2 purine permease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352100 [exp] 385 / 7e-133 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G147600 [exp] 312 / 5e-104 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 281 / 3e-92 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.005G160300 [exp] 142 / 6e-39 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 113 / 2e-28 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.006G184900 [exp] 112 / 1e-27 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.003G156900 [exp] 76 / 5e-15 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 62 / 1e-10 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008689 [exp] 327 / 1e-109 AT4G18210 382 / 3e-131 purine permease 10 (.1) Lus10026130 [exp] 318 / 2e-106 AT4G18210 382 / 2e-131 purine permease 10 (.1) Lus10028132 [exp] 286 / 5e-93 AT4G18220 361 / 4e-123 Drug/metabolite transporter superfamily protein (.1) Lus10038492 [exp] 278 / 1e-90 AT4G18210 344 / 3e-116 purine permease 10 (.1) Lus10043350 [exp] 257 / 2e-82 AT1G44750 456 / 8e-161 purine permease 11 (.1.2.3) Lus10019503 [exp] 254 / 2e-81 AT1G44750 452 / 1e-159 purine permease 11 (.1.2.3) Lus10030927 [exp] 247 / 1e-78 AT4G18210 336 / 1e-113 purine permease 10 (.1) Lus10040118 [exp] 247 / 1e-78 AT4G18210 336 / 2e-113 purine permease 10 (.1) Lus10042836 [exp] 169 / 4e-52 AT4G18220 155 / 2e-47 Drug/metabolite transporter superfamily protein (.1) Lus10023317 [exp] 142 / 2e-41 AT4G18210 150 / 3e-45 purine permease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF16913 [poplar] [flax] PUNUT Purine nucleobase transmembrane transport
Representative CDS sequence Show only first row Show all	>Potri.001G352200.1 pacid=42792280 polypeptide=Potri.001G352200.1.p locus=Potri.001G352200 ID=Potri.001G352200.1.v4.1 annot-version=v4.1 ATGGGAGAAGCTCAGGAAGTGCAGCTCCAAGTCATGGGGAAAGAAGCCAAAGAGGCAAGCCCACCTAGGCATGAAAATGAGACCAACCAGCCAGCAATAC CTCAAAAGAGAAACTCTAAGTGGTGGCTCCTAGTGGCCTTCTATTCACTTCTTCTTCTTGCTGGCCAGTCAGTGGCCGTTCTCTTGGGAAGATTATATTT CGAAAAGGGTGGGAATAGTAGCTGGATGGGAGCACTTGTGCAGCCTGCTGGATTTCCCATTCTCCTTCCCTTTTACTTGTCACAACCAAAAAGTCCTTCC ACAAGCAACTTCGAAACAAACTTGCCTTCTAATTTAGTCCTTGCTTCAATTTATATTTCAAGTGGCTTATTTCTAGCCATAGTTAGTATGTTGCATTCAC TTGGTCTCAAATACCTTCCAGTGTCTACTTATTCTCTTGTTTGTGCATCCCAATTGGGCTTCAATGCTTTGTTCTCTTTCTTCCTCAACTCCCTTAAGCT CACTCCTTTCATAATCAATTCTTTAGTACTTCTCACCATCTCCTCCATCCTCCTTGTATTCCAAGACGACTCCGCAGAATCTAAACAAGTCTACAAAAGA AAGTACGCATTCGGATTTATATGCACTGTTGGTGCTTCTGCTGGATATGGATTGCTGCTTTCTTTAACCCAATTTGCCTTTAAGAAGGTTCTAAAGCAGG AAACCTTCAAGGTGGTTTTGGATATGACAATCTATCCATCACTAGCTTGTACCATTGCTGTCCTAGTGGGACTTTTTGCTAGCGGAGAATGGAAGGGTTT AGGGAAAGAGATGGAAGGTTTTAAACTTGGAGAAGTATCCTACTGCATGACTTTAATTTGGACTGCAATATCCTGGCAGCTTTTCTCTATTGGTTGTGTA GGATTGATTTTCGAGGTGTCCTCGGTCTTCTCGAATGCCATTAGTACTTTTGGTTTGCCTGTAGTTCCTGTCCTCGCCGTTTTCTGTTTTGGTGACAAAA TGGATGTTATCAAGGCTATTGCCATGGTGTTGGCTATATGGGGCTTTCTTTCATATGTCTATCAGCACTATCTTGATGACTGCAAGCTCAAGAAACAAAA AAGCAATGCCGCCGCTACTGAAATGTTAATCACTGGATGA
AA sequence Show only first row Show all	>Potri.001G352200.1 pacid=42792280 polypeptide=Potri.001G352200.1.p locus=Potri.001G352200 ID=Potri.001G352200.1.v4.1 annot-version=v4.1 MGEAQEVQLQVMGKEAKEASPPRHENETNQPAIPQKRNSKWWLLVAFYSLLLLAGQSVAVLLGRLYFEKGGNSSWMGALVQPAGFPILLPFYLSQPKSPS TSNFETNLPSNLVLASIYISSGLFLAIVSMLHSLGLKYLPVSTYSLVCASQLGFNALFSFFLNSLKLTPFIINSLVLLTISSILLVFQDDSAESKQVYKR KYAFGFICTVGASAGYGLLLSLTQFAFKKVLKQETFKVVLDMTIYPSLACTIAVLVGLFASGEWKGLGKEMEGFKLGEVSYCMTLIWTAISWQLFSIGCV GLIFEVSSVFSNAISTFGLPVVPVLAVFCFGDKMDVIKAIAMVLAIWGFLSYVYQHYLDDCKLKKQKSNAAATEMLITG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18220			Drug/metabolite transporter su...		Potri.001G352200 [exp]	0	1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	4.69	0.7281
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	8.30	0.7118
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180466 [exp]	9.38	0.6586
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180600 [exp]	9.79	0.6529	Pt-RCOMT1.7
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.010G072300 [exp]	11.61	0.6993	Pt-ERF1.2,ERF33
					Potri.010G032101 [exp]	12.48	0.5980
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180500 [exp]	14.38	0.6059
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	16.61	0.7116
AT3G47570			Leucine-rich repeat protein ki...		Potri.010G228200 [exp]	17.32	0.6591
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.004G037800 [exp]	17.66	0.6026

Compare expression of checked genes

Potri.001G352200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.