Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34410 881 / 0 RWA3 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) AT5G46340 860 / 0 RWA1 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) AT1G29890 852 / 0 RWA4 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2) AT3G06550 762 / 0 RWA2 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079400 [exp] 978 / 0 AT2G34410 861 / 0.0 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) Potri.008G102300 [exp] 787 / 0 AT3G06550 843 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Potri.010G148500 [exp] 774 / 0 AT3G06550 829 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003348 [exp] 905 / 0 AT5G46340 905 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10015265 [exp] 833 / 0 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10012523 [exp] 822 / 0 AT5G46340 807 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10017079 [exp] 790 / 0 AT3G06550 859 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Lus10037795 [exp] 765 / 0 AT5G46340 838 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10000367 [exp] 606 / 0 AT1G29890 605 / 0.0 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [poplar] [flax] Acyl_transf_3 PF07779 [poplar] [flax] Cas1_AcylT 10 TM Acyl Transferase domain found in Cas1p
Representative CDS sequence Show only first row Show all	>Potri.001G352300.6 pacid=42792061 polypeptide=Potri.001G352300.6.p locus=Potri.001G352300 ID=Potri.001G352300.6.v4.1 annot-version=v4.1 ATGGTGGTATCCGGCCCTATCACGCCTGGACAGGTTTCGTTTTTGCTTGGATTTATCCCAGTTTTTGTTGCATGGATATATTCAGAGTTCCTAGAGTATA AGAAAACTTCATCCCCTCAAAAAGTTCATTCAGATAATAATCTGCTTGACTTGGAGAAGGAGACAATCAAGGAAGATGATCGGGCTGTTTTGCTGGAGGG AGGCCTCCCTAGATCAGCATCTGCCAAATTTCATAGTTCTGCCATCAAAATGAACTTAATTAGGTTTATGACTTTGGATGACTCTTTCTTGCTAGAAAAC CGAGCAACTTTGAGAGCAATGTCTGAGTTTGGGGCAGTCTTGTTGTACTTCTATATCTGTGATCGCACAAATATACTGGGAGAATCTACCAAGAGCTACA ATCGTGACCTTTTTGTTTTCCTATATATTCTTCTCATCATAGTCTCATCAATGACTTCATTGAGGAAACATACTGACAAGTCAGCTTTCACTGGAAAATC CATGCTTTACCTTAACCGGCATCAGACTGAGGAGTGGAAAGGATGGATGCAGGTCCTATTCTTGATGTACCATTATTTTGCCGCAGCAGAGATATACAAT GCAATACGTATCTTTATTGCTGCATATGTTTGGATGACTGGATTTGGCAACTTTTCTTATTATTACATTAGAAAGGATTTTAGCGTAGCTCGCTTTTCTC AGATGATGTGGCGGCTCAATTTCTTTGTGGCATTTTGCTGTATTATCCTTAACAATGACTACATGCTGTATTATATTTGCCCAATGCACACTCTATTCAC TTTAATGGTCTATGGAGCGCTTGGTATTTTTAACAAGTATAATGAGAATAGCTCAGTGATGGCTGTGAAGATTCTTTCATGCTTTCTTGTGGTTATCTTG ATTTGGGAAATCCCTGGAGTTTTTGACTTTCTCTGGAGTCCATTAACTTTCCTATTAGGCTATTCTGATCCTGCAAAGCCAGACCTTCCTAGGCTGCATG AGTGGCACTTCAGATCTGGACTTGATCGCTATATATGGATCATTGGGATGATATATGCATATTTTCACCCCAATATTGAGAAGTGGATGGAGAAATTGGA GGAATCTGAAACCAAGAAAAAACTGTCAATGAAAACAGGCATAGTAGCTGTTTCAGTATCTGTTGGTTATTTGTGGTATGAATATATATACAAGCTGGAC AAAGTTTCTTACAACAAGTACCACCCCTACACATCATGGATACCCATAACTGTTTACATTTGCTTGCGGAATTGCACTCAGCAGCTCCGGAGTTTCTCTT CGACTCTCTTTGCTTGGCTTGGCAAGATAACTTTGGAGACCTATATTTCACAGTTCCACATCTGGCTGAGATCGGACATTCCCAATGGACAGCCTAAATG GCTCCTTTCTTTTATTCCAGAATATCCATTACTGAATTTCATGCTTACAACAGCCATCTATGTCCTAGTTTCTCATCGACTTTTTGAATTGACCAATACA CTAAAGACAGTTTTCATACCCACAAAAGACAATAAGCGGCTGTTTTACAACTCTGTTGCCGGGGCTGCTATTTCTGTGTGTTTGTACTGTGTTGCCGTCA TTCTCCTTCACATCCCTCATTCACCAGCCTGA
AA sequence Show only first row Show all	>Potri.001G352300.6 pacid=42792061 polypeptide=Potri.001G352300.6.p locus=Potri.001G352300 ID=Potri.001G352300.6.v4.1 annot-version=v4.1 MVVSGPITPGQVSFLLGFIPVFVAWIYSEFLEYKKTSSPQKVHSDNNLLDLEKETIKEDDRAVLLEGGLPRSASAKFHSSAIKMNLIRFMTLDDSFLLEN RATLRAMSEFGAVLLYFYICDRTNILGESTKSYNRDLFVFLYILLIIVSSMTSLRKHTDKSAFTGKSMLYLNRHQTEEWKGWMQVLFLMYHYFAAAEIYN AIRIFIAAYVWMTGFGNFSYYYIRKDFSVARFSQMMWRLNFFVAFCCIILNNDYMLYYICPMHTLFTLMVYGALGIFNKYNENSSVMAVKILSCFLVVIL IWEIPGVFDFLWSPLTFLLGYSDPAKPDLPRLHEWHFRSGLDRYIWIIGMIYAYFHPNIEKWMEKLEESETKKKLSMKTGIVAVSVSVGYLWYEYIYKLD KVSYNKYHPYTSWIPITVYICLRNCTQQLRSFSSTLFAWLGKITLETYISQFHIWLRSDIPNGQPKWLLSFIPEYPLLNFMLTTAIYVLVSHRLFELTNT LKTVFIPTKDNKRLFYNSVAGAAISVCLYCVAVILLHIPHSPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	0	1
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	1.00	0.9640
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.011G096500 [exp]	1.73	0.9528
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.008G182700 [exp]	2.23	0.9526
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.014G100400 [exp]	2.44	0.9521
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252400 [exp]	2.44	0.9543
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	3.00	0.9462
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G320500 [exp]	3.74	0.9468	SAHH.1
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	4.89	0.9463	SHMT3
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	6.32	0.9528
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.014G040300 [exp]	8.00	0.9188

Compare expression of checked genes

Potri.001G352300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.